PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN001506000
• symbol^?: recJ
• synonym:
• description^?: single-stranded-DNA-specific exonuclease RecJ

  descriptions from strain specific annotations:

  • single-stranded-DNA-specific exonuclease RecJ
  • putative phosphoesterase
  • Single-stranded DNA-specific exonuclease
  • single-stranded DNA exonuclease
  • putative phosphoesterase (pseudogene)
  • Single-stranded DNA-specific exonuclease, 5'-3'
  • pseudogene
• strand^?: +
• coordinates^?: 1924372..1926594
• occurrence^?: in 100% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS03005 (recJ)
(2)
D39:
SPD_RS02855 (recJ)
(2)
D39V:
SPV_RS02850 (recJ)
(19A)
Hungary19A-6:
SPH_RS03430 (recJ)
(19F)
EF3030:
EF3030_RS02880 (recJ)
(6B)^?
670-6B:
SP670_RS03350 (recJ)
(6A)
6A-10:
HKM25_RS02925 (recJ)
(5)
70585:
SP70585_RS03310 (recJ)
(19F)
A026:
T308_RS02925 (recJ)
(3)
A66:
A66_RS02775 (recJ)
(11A)
AP200:
SPAP_RS02970 (recJ)
(12F)
ASP0581:
EL334_RS03085 (recJ)
(19F)
ATCC 49619:
EL263_RS03025 (recJ)
(23F)
ATCC 700669:
SPN23F_RS02820 (recJ)
(19F)
BM6001:
ODS73_RS03315 (recJ)
(1)
BVJ1JL:
JN057_RS03015 (recJ)
(14)
CGSP14:
SPCG_RS03015 (recJ)
(19F)
G54:
SPG_RS02805 (recJ)
(1)
gamPNI0373:
HMPREF1038_RS03130 (recJ)
(3)
HU-OH:
EL271_RS02810 (recJ)
(19A)
Hu15:
SPNHU15_RS03110 (recJ)
(19A)
Hu17:
SPNHU17_RS03040 (recJ)
(1)
INV104:
INV104_RS02995 (recJ)
(14)
INV200:
SPNINV200_RS02885 (recJ)
(14)
JJA:
SPJ_RS02825 (recJ)
(19F)
MDRSPN001:
MDRSPN_RS07540 (recJ)
(1)
NCTC7465:
AT689_RS10680 (recJ)
(2)
NCTC7466:
DQM66_RS02855 (recJ)
(4)
NU83127:
EL277_RS03075 (recJ)
(3)
OXC141:
SPNOXC_RS03005 (recJ)
(1)
P1031:
SPP_RS03085 (recJ)
(2)
R6:
SPR_RS02715 (recJ)
(19A)
SP49:
BMJ42_RS03570 (recJ)
(1)
SPN032672:
SPN032672_RS09265 (recJ)
(3)
SPN034156:
SPN034156_RS08930 (recJ)
(3)
SPN034183:
SPN034183_RS03020 (recJ)
(3)
SPN994038:
SPN994038_RS02940 (recJ)
(3)
SPN994039:
SPN994039_RS02940 (recJ)
(3)
SPNA45:
SPNA45_RS08375 (recJ)
(19F)
ST556:
MYY_RS03395 (recJ)
(19F)
Taiwan19F-14:
SPT_RS03175 (recJ)
(19A)
TCH8431/19A:
HMPREF0837_RS04350 (recJ)
(4)
Xen35:
CXP32_RS03065 (recJ)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MITPTYEWQFALQVEDADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLHD
  D39             MITPTYEWQFALQVEDADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLHD
  D39V            MITPTYEWQFALQVEDADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLHD
  Hungary19A-6    MITPTYEWQFALQVEDADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLHD
  EF3030          MITPTYEWQFALQVEDADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLHD
                  ******************************************:*****************
  
  TIGR4           AYLLHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRF
  D39             AYLLHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRF
  D39V            AYLLHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRF
  Hungary19A-6    AYLLHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRF
  EF3030          AYLLHDMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRF
                  ************************************************************
  
  TIGR4           TDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPD
  D39             TDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPD
  D39V            TDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPD
  Hungary19A-6    TDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPD
  EF3030          TDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPD
                  ************************************************************
  
  TIGR4           AYAIVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
  D39             AYAIVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
  D39V            AYAIVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
  Hungary19A-6    AYAIVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
  EF3030          AYAIVHPEHPDADYPFKYLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
                  ************************************************************
  
  TIGR4           ILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLDDPNPAIDL
  D39             ILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLDDPNPAIDL
  D39V            ILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLDDPNPAIDL
  Hungary19A-6    ILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLDDPNPAIDL
  EF3030          ILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLDDPNPAIDL
                  ************************************************************
  
  TIGR4           LTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMVDPEKKVQVLAKEGWNPGVLGIV
  D39             LTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMVDPEKKVQVLAKEGWNPGVLGIV
  D39V            LTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMVDPEKKVQVLAKEGWNPGVLGIV
  Hungary19A-6    LTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMVDPEKKVQVLAKEGWNPGVLGIV
  EF3030          LTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMVDPEKKVQVLAKEGWNPGVLGIV
                  ************************************************************
  
  TIGR4           AGRLLEELGQTVIVLNIEDGRAKGSARSVEAVDIFEALDPHRDLFIAFGGHAGAAGMTLE
  D39             AGRLLEELGQTVIVLNIEDGRAKGSARSVEAVDIFEALDPHRDLFIAFGGHAGAAGMTLE
  D39V            AGRLLEELGQTVIVLNIEDGRAKGSARSVEAVDIFEALDPHRDLFIAFGGHAGAAGMTLE
  Hungary19A-6    AGRLLEELGQTVIVLNIEDGRAKGSARSVEAVDIFEALDPYRDLFIAFGGHAGAAGMTLE
  EF3030          AGRLLEELGQTVIVLNIEDGRAKGSARSVEAVDIFEALDPHRDLFIAFGGHAGAAGMTLE
                  ****************************************:*******************
  
  TIGR4           VEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLETVKSFERLAPFGMDNQKP
  D39             VEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLETVKSFERLAPFGMDNQKP
  D39V            VEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLETVKSFERLAPFGMDNQKP
  Hungary19A-6    VEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLETVKSFERLAPFGMDNQKP
  EF3030          VEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLETVKSFERLAPFGMDNQKP
                  ************************************************************
  
  TIGR4           IFYIKNFQVESARTMGAGNAHLKLKISKGEASFEVVAFGQGRWATEFSQTKNLELAVKLS
  D39             IFYIKNFQVESARTMGAGNAHLKLKISKGEASFEVVAFGQGRWATEFSQTKNLELAVKLS
  D39V            IFYIKNFQVESARTMGAGNAHLKLKISKGEASFEVVAFGQGRWATEFSQTKNLELAVKLS
  Hungary19A-6    IFYIKNFQVESARTMGAGNAHLKLKISRGEASFEVVAFGQGRWATEFSQTKNLELAVKLS
  EF3030          IFYIKNFQVESARTMGAGNAHLKLKISKGEASFEVVAFGQGRWATEFSQTKNLELAVKLS
                  ***************************:********************************
  
  TIGR4           VNQWNGQTALQLMMVDARVEGVQLFNIRGKNAVLPEGVPVLDFPGELPNLAASEAVVVKN
  D39             VNQWNGQTALQLMMVDARVEGVQLFNIRGKNAVLPEGVPVLDFPGELPNLAASEAVVVKN
  D39V            VNQWNGQTALQLMMVDARVEGVQLFNIRGKNAVLPEGVPVLDFPGELPNLAASEAVVVKN
  Hungary19A-6    VNQWNGQTALQLMMVDARVEGVQLFNIRGKNAVLPEGVPVLDFPGELPNLAASEAVVVKN
  EF3030          VNQWNGQTALQLMMVDARVEGVQLFNIRGKNAVLPEGVPVLDFPGELPNFAASEAIVVKN
                  *************************************************:*****:****
  
  TIGR4           IPEDITQLKTIFQEQHFSAVYFKNDIDKAYYLTGYGTRDQFAKLYKTIYQFPEFDIRYKL
  D39             IPEDITQLKTIFQEQHFSAVYFKNDIDKAYYLTGYGTRDQFAKLYKTIYQFPEFDIRYKL
  D39V            IPEDITQLKTIFQEQHFSAVYFKNDIDKAYYLTGYGTRDQFAKLYKTIYQFPEFDIRYKL
  Hungary19A-6    IPEDITQLKTIFQEQHFSAVYFKNDIDKAYYLTGYGTRDQFAKLYKTIYQFPEFDIRYKL
  EF3030          IPEDITQLKTIFQEQHFSAVYFKNDIDKAYYLTGYGTRDQFAKLYKTIYQFPEFDIRYKL
                  ************************************************************
  
  TIGR4           KDLAAYLNIQQILLVKMIQVFEELGFVTIKDGVMTVNKEAPKREIGESQIYQNLKQTVKD
  D39             KDLAAYLNIQQILLVKMIQVFEELGFVTIKDGVMTVNKEAPKREIGESQIYQNLKQTVKD
  D39V            KDLAAYLNIQQILLVKMIQVFEELGFVTIKDGVMTVNKEAPKREIGESQIYQNLKQTVKD
  Hungary19A-6    KDLAAYLNIQQILLVKMIQVFEELGFVTIKDGVMTVNKEAPKREIGESQIYQNLKQTVKD
  EF3030          KDLAAYLNIQQILLVKMIQVFEELGFVTIKDGVMTVNKEAPKREIGESQIYQNLKQTVKD
                  ************************************************************
  
  TIGR4           QEMMALGTVQEIYDFLMEKE
  D39             QEMMALGTVQEIYDFLMEKE
  D39V            QEMMALGTVQEIYDFLMEKE
  Hungary19A-6    QEMMALGTVQEIYDFLMEKE
  EF3030          QEMMALGTVQEIYDFLMEKE
                  ********************