PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN001507000
• symbol^?: rnjB
• synonym:
• description^?: ribonuclease J

  descriptions from strain specific annotations:

  • ribonuclease J
  • metallo-beta-lactamase superfamily protein
  • metallo-beta-lactamase family protein
  • Ribonuclease J 2
  • Conserved hypothetical protein
  • Predicted hydrolase of the metallo-beta-lactamase superfamily
  • Ribonuclease J2 (endoribonuclease in RNA processing)
  • pseudogene
• strand^?: +
• coordinates^?: 1926769..1928431
• occurrence^?: in 100% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS03010
(2)
D39:
SPD_RS02860
(2)
D39V:
SPV_RS02855
(19A)
Hungary19A-6:
SPH_RS03435
(19F)
EF3030:
EF3030_RS02885
(6B)^?
670-6B:
SP670_RS03355
(6A)
6A-10:
HKM25_RS02930
(5)
70585:
SP70585_RS03315
(19F)
A026:
T308_RS02930
(3)
A66:
A66_RS02780
(11A)
AP200:
SPAP_RS02975
(12F)
ASP0581:
EL334_RS03090
(19F)
ATCC 49619:
EL263_RS03030
(23F)
ATCC 700669:
SPN23F_RS02825
(19F)
BM6001:
ODS73_RS03320
(1)
BVJ1JL:
JN057_RS03020
(14)
CGSP14:
SPCG_RS03020
(19F)
G54:
SPG_RS02810
(1)
gamPNI0373:
HMPREF1038_RS03135
(3)
HU-OH:
EL271_RS02815
(19A)
Hu15:
SPNHU15_RS03115
(19A)
Hu17:
SPNHU17_RS03045
(1)
INV104:
INV104_RS03000
(14)
INV200:
SPNINV200_RS02890
(14)
JJA:
SPJ_RS02830
(19F)
MDRSPN001:
MDRSPN_RS07535
(1)
NCTC7465:
AT689_RS10675
(2)
NCTC7466:
DQM66_RS02860
(4)
NU83127:
EL277_RS03080
(3)
OXC141:
SPNOXC_RS03010
(1)
P1031:
SPP_RS03090
(2)
R6:
SPR_RS02720
(19A)
SP49:
BMJ42_RS03575
(1)
SPN032672:
SPN032672_RS09270
(3)
SPN034156:
SPN034156_RS08935
(3)
SPN034183:
SPN034183_RS03025
(3)
SPN994038:
SPN994038_RS02945
(3)
SPN994039:
SPN994039_RS02945
(3)
SPNA45:
SPNA45_RS08370
(19F)
ST556:
MYY_RS03400
(19F)
Taiwan19F-14:
SPT_RS03180
(19A)
TCH8431/19A:
HMPREF0837_RS04355
(4)
Xen35:
CXP32_RS03070

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MSNISLTTLGGVRENGKNMYIAEIGESIFVLNVGLKYPENEQLGVDVVIPNMDYLFENSD
  D39             MSNISLTTLGGVRENGKNMYIAEIGESIFVLNVGLKYPENEQLGVDVVIPNMDYLFENSD
  D39V            MSNISLTTLGGVRENGKNMYIAEIGESIFVLNVGLKYPENEQLGVDVVIPNMDYLFENSD
  Hungary19A-6    MSNISLTTLGGVRENGKNMYIAEIGESIFVLNVGLKYPENEQLGVDVVIPNMDYLFENSD
  EF3030          MSNISLTTLGGVRENGKNMYIAEIGESIFVLNVGLKYPENEQLGVDVVIPNMDYLFENSD
                  ************************************************************
  
  TIGR4           RIAGVFLTHGHADAIGALPYLLAEAKVPVFGSELTIELAKLFVKGNDAVKKFNDFHVIDE
  D39             RIAGVFLTHGHADAIGALPYLLAEAKVPVFGSELTIELAKLFVKGNDAVKKFNDFHVIDE
  D39V            RIAGVFLTHGHADAIGALPYLLAEAKVPVFGSELTIELAKLFVKGNDAVKKFNDFHVIDE
  Hungary19A-6    RIAGVFLTHGHADAIGALPYLLAEAKVPVFGSELTIELAKLFVKGNDAVKKFNDFHVIDE
  EF3030          RIAGVFLTHGHADAIGALPYLLAEAKVPVFGSELTIELAKLFVKGNDAVKKFNDFHVIDE
                  ************************************************************
  
  TIGR4           NTEIDFGGTVVSFFPTTYSVPESLGIVLKTSEGSIVYTGDFKFDQTASESYATDFARLAE
  D39             NTEIDFGGTVVSFFPTTYSVPESLGIVLKTSEGSIVYTGDFKFDQTASESYATDFARLAE
  D39V            NTEIDFGGTVVSFFPTTYSVPESLGIVLKTSEGSIVYTGDFKFDQTASESYATDFARLAE
  Hungary19A-6    NTEIDFGGTVVSFFPTTYSVPESLGIVLKTSEGSIVYTGDFKFDQTASESYATDFARLAE
  EF3030          NTEIDFGGTVVSFFPTTYSVPESLGIVLKTSEGSIVYTGDFKFDQTASESYATDFARLAE
                  ************************************************************
  
  TIGR4           IGRDGVLALLSDSANADSNIQVASESEVRDEITQTIADWEGRIIVAAVSSNLSRIQQIFD
  D39             IGRDGVLALLSDSANADSNIQVASESEVRDEITQTIADWEGRIIVAAVSSNLSRIQQIFD
  D39V            IGRDGVLALLSDSANADSNIQVASESEVRDEITQTIADWEGRIIVAAVSSNLSRIQQIFD
  Hungary19A-6    IGRDGVLALLSDSANADSNIQVASESEVRDEITQTIADWEGRIIVAAVSSNLSRIQQIFD
  EF3030          IGRDGVLALLSDSANADSNIQVASESEVRDEITQTIADWEGRIIVAAVSSNLSRIQQIFD
                  ************************************************************
  
  TIGR4           AADKTGRRIVLTGFDIENIVRTAIRLKKLSLANEILLIKPKDMSRFEDHELIILETGRMG
  D39             AADKTGRRIVLTGFDIENIVRTAIRLKKLSLANEILLIKPKDMSRFEDHELIILETGRMG
  D39V            AADKTGRRIVLTGFDIENIVRTAIRLKKLSLANEILLIKPKDMSRFEDHELIILETGRMG
  Hungary19A-6    AADKTGRRIVLTGFDIENIVRTAIRLKKLSLANEILLIKPKDMSRFEDHELIILETGRMG
  EF3030          AADKTGRRIVLTGFDIENIVRTAIRLKKLSLANEILLIKPKDMSRFEDHELIILETGRMG
                  ************************************************************
  
  TIGR4           EPINGLRKMSIGRHRYVEIKDGDLVYIATAPSIAKEAFVARVENMIYQAGGVVKLITQSL
  D39             EPINGLRKMSIGRHRYVEIKDGDLVYIATAPSIAKEAFVARVENMIYQAGGVVKLITQSL
  D39V            EPINGLRKMSIGRHRYVEIKDGDLVYIATAPSIAKEAFVARVENMIYQAGGVVKLITQSL
  Hungary19A-6    EPINGLRKMSIGRHRYVEIKDGDLVYIATAPSIAKEAFVARVENMIYQAGGVVKLITQSL
  EF3030          EPINGLRKMSIGRHRYVEIKDGDLVYIATAPSIAKEAFVARVENMIYQAGGVVKLITQSL
                  ************************************************************
  
  TIGR4           HVSGHGNVRDLQLMINLLQPKYLFPVQGEYRELDAHAKAAMAVGMLPERIFIPKKGTTMA
  D39             HVSGHGNVRDLQLMINLLQPKYLFPVQGEYRELDAHAKAAMAVGMLPERIFIPKKGTTMA
  D39V            HVSGHGNVRDLQLMINLLQPKYLFPVQGEYRELDAHAKAAMAVGMLPERIFIPKKGTTMA
  Hungary19A-6    HVSGHGNARDLQLMINLLQPQYLFPIQGEYRELDAHAKAAMAVGMLPERIFIPKKGTSMA
  EF3030          HVSGHGNVRDLQLMINLLQPKYLFPVQGEYRELDAHAKAAMAVGMLPERIFIPKKGTTMA
                  *******.************:****:*******************************:**
  
  TIGR4           YENGDFVPAGSVSAGDILIDGNAIGDVGNVVLRDRKVLSEDGIFIVAITVNRREKKIVAR
  D39             YENGDFVPAGSVSAGDILIDGNAIGDVGNVVLRDRKVLSEDGIFIVAITVNRREKKIVAR
  D39V            YENGDFVPAGSVSAGDILIDGNAIGDVGNVVLRDRKVLSEDGIFIVAITVNRREKKIVAR
  Hungary19A-6    YENGDFVPAGAVSAGDVLIDGNAIGDVGNVVLRDRKVLSEDGIFIVAITVNRREKKIVAK
  EF3030          YENGDFVPAGSVSAGDILIDGNAIGDVGNVVLRDRKVLSEDGIFIVAITVNRREKKIVAR
                  **********:*****:******************************************:
  
  TIGR4           ARVHTRGFVYLKKSRDILRESSELINQTVEEYLQGDDFDWADLKGKVRDNLTKYLFDQTK
  D39             ARVHTRGFVYLKKSRDILRESSELINQTVEEYLQGDDFDWADLKGKVRDNLTKYLFDQTK
  D39V            ARVHTRGFVYLKKSRDILRESSELINQTVEEYLQGDDFDWADLKGKVRDNLTKYLFDQTK
  Hungary19A-6    ARVHTRGFVYLKKSRDILRESSELINQTVEDYLQGDDFDWADLKGKVRDNLTKYLFDQTK
  EF3030          ARVHTRGFVYLKKSRDILRESSELINQTVEEYLQGDDFDWADLKGKVRDNLTKYLFDQTK
                  ******************************:*****************************
  
  TIGR4           RRPAILPVVMEAK
  D39             RRPAILPVVMEAK
  D39V            RRPAILPVVMEAK
  Hungary19A-6    RRPAILPVVMEAK
  EF3030          RRPAILPVVMEAK
                  *************