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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001547000
- symbol?: tcyJ
- synonym:
- description?: amino acid ABC transporter substrate-binding protein
- amino acid ABC transporter substrate-binding protein
- ABC transporter substrate-binding protein - glutamine transport/Major cell binding factor
- putative extracellular solute-binding protein
- L-cystine-binding protein TcyJ
- ABC transporter, substrate-binding protein
- amino acid ABC transporter, amino acid-binding protein, putative
- amino acid ABC transporter amino acid-binding protein
- glutamine ABC transporter substrate-binding protein
- ABC transporter, substrate-binding protein, family 3
- ABC transporter substrate-binding protein - glutamine transport/Major cell binding factor precursor
- ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein
- bacterial extracellular solute-binding, 3 family protein
- Cysteine ABC transporter substrate-binding protein
- L-Cystine ABC transporter, periplasmic cystine-binding protein TcyA
- putative amino acid ABC transporter, amino acid-binding protein
- putative extracellular solute-binding protein (pseudogene)
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 1893342..1894142
- occurrence?: in 100% of 41 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKKFSLLLAILPFLVACENQATPKETSAQKTIVLATAGDVPPFDYEDKGNLTGFDIEVLK
D39 MKKFSLLLAILPFLVACGNQATPKETSAQKTIVLATAGDVPPFDYEDKGNLTGFDIEVLK
D39V MKKFSLLLAILPFLVACGNQATPKETSAQKTIVLATAGDVPPFDYEDKGNLTGFDIEVLK
Hungary19A-6 MKKFSLLLAILPFLVACGNQATPKETSAQKTIVLATAGDVPPFDYEDKGNLTGFDIEVLK
EF3030 MKKFSLLLAILPFLVACGNQATPKETSAQKTIVLATAGDVPPFDYEDKGNLTGFDIEVLK
***************** ******************************************
TIGR4 AVDEKLSDYEIQFQRTAWESIFPGLDSGHYQAAANNLSYTKERAEKYLYSLPISNNPLVL
D39 AVDEKLSDYEIQFQRTAWESIFPGLDSGHYQAAANNLSYTKERAEKYLYSLPISNNPLVL
D39V AVDEKLSDYEIQFQRTAWESIFPGLDSGHYQAAANNLSYTKERAEKYLYSLPISNNPLVL
Hungary19A-6 AVDEKLSDYEIQFQRTAWESIFPGLDSGHYQAAANNLSYTKERAEKYLYSLPISNNPLVL
EF3030 AVDEKLSDYEIQFQRTAWESIFPGLDSGHYQAAANNLSYTKERAEKYLYSLPISNNPLVL
************************************************************
TIGR4 VSNKKNPLTSLDQIAGKTTQEDTGTSNAQFINNWNQKHTDNPATINFSGEDIGKRILDLA
D39 VSNKKNPLTSLDQIAGKTTQEDTGTSNAQFINNWNQKHTDNPATINFSGEDIGKRILDLA
D39V VSNKKNPLTSLDQIAGKTTQEDTGTSNAQFINNWNQKHTDNPATINFSGEDIGKRILDLA
Hungary19A-6 VSNKKNPLTSLDQIAGKTTQEDTGTSNAQFINNWNQKHTDNPATINFSGEDIGKRILDLA
EF3030 VSNKKNPLTSLDQIAGKTTQEDTGTSNAQFINNWNQKHTDNPATINFSGEDIGKRILDLA
************************************************************
TIGR4 NGEFDFLVFDKVSVQKIIKDRGLDLSVVDLPSADSPSNYIIFSSDQKEFKEQFDKALKEL
D39 NGEFDFLVFDKVSVQKIIKDRGLDLSVVDLPSADSPSNYIIFSSDQKEFKEQFDKALKEL
D39V NGEFDFLVFDKVSVQKIIKDRGLDLSVVDLPSADSPSNYIIFSSDQKEFKEQFDKALKEL
Hungary19A-6 NGEFDFLVFDKVSVQKIIKDRGLDLSVVDLPSADSPSNYIIFSSDQKEFKEQFDKALKEL
EF3030 NGEFDFLVFDKVSVQKIIKDRGLDLSVVDLPSADSPSNYIVFSSDQKEFKEQFDKALKEL
****************************************:*******************
TIGR4 YQDGTLEKLSNTYLGGSYLPDQSQLQ
D39 YQDGTLEKLSNTYLGGSYLPDQSQLQ
D39V YQDGTLEKLSNTYLGGSYLPDQSQLQ
Hungary19A-6 YQDGTLEKLSNTYLGGSYLPDQSQLQ
EF3030 YQDGTLEKLSNTYLGGSYLPDQSQLQ
**************************