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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001556000
- symbol?: tnp (pseudogene)
- synonym:
- description?: IS5 family transposase
- IS5 family transposase
- putative transposase (pseudogene)
- IS1381, transposase (pseudogene)
- IS5/IS1182 family transposase
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 1900611..1901418
- occurrence?: in 39% of 41 strains
⊟Orthologs[edit | edit source]
Hungary19A-6:
—
EF3030:
—
A026:
—
A66:
—
AP200:
—
BVJ1JL:
—
CGSP14:
—
G54:
—
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
D39 MNYEASKQLTDARFKRLVGVQRTTFEEILAVLKTAYQLKHAKGGRKPKLSLEDFLMATLQ
D39V MNYEASKQLTDARFKRLVGVQRTTFEEILAVLKTAYQLKHAKGGRKPKLSLEDFLMATLQ
************************************************************
D39 YVREYRTYEEIAADFGIHESNLIRRSRWVEVTLVQSGVTISRTPLSSEDTVMIDATEVQI
D39V YVREYRTYEEIAADFGIHESNLIRRSRWVEVTLVQSGVTISRTPLSSEDTVMIDATEVQI
************************************************************
D39 NRPKKELANYSGKKKCHAMKAQAIVTSQGRFVSLDITVNYCHDMKLFKMSRRNIGQAGKI
D39V NRPKKELANYSGKKKCHAMKAQAIVTSQGRFVSLDITVNYCHDMKLFKMSRRNIGQAGKI
************************************************************
D39 LADSGYQGLMKIYPQAQTPRKSSKLKPLTAEDKACNHALSKERSKVENIFAKVKTFKMFS
D39V LADSGYQGLMKIYPQAQTPRKSSKLKPLTAEDKACNHALSKERSKVENIFAKVKTFKMFS
************************************************************
D39 TTYRNHRKRFGLRMNLSAGIINHELGF
D39V TTYRNHRKRFGLRMNLSAGIINHELGF
***************************