Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001596000
- symbol?: rsuA-2
- synonym:
- description?: 16S rRNA pseudouridine(516) synthase
- 16S rRNA pseudouridine(516) synthase
- putative ribosomal small subunit pseudouridine synthase A
- ribosomal small subunit pseudouridine synthase A
- ribosomal small subunit pseudouridine synthase A, putative
- pseudouridine synthase
- Ribosomal small subunit pseudouridine synthase
- 16S rRNA uridine-516 pseudouridylate synthase-like pseudouridylate synthase
- pseudouridine synthase family protein
- pseudouridylate synthase
- rRNA pseudouridine synthase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 2031816..2032541
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MRLDNLLAQEKISRKAMKQALLRGEILVDGCPARSLAQNIDTGLQELLFQDRIIQGYEHT
D39 MRLDNLLAQEKISRKAMKQALLRGKILVDGCPARSLAQNIDTGLQELLFQDRIIQGYEHT
D39V MRLDNLLAQEKISRKAMKQALLRGKILVDGCPARSLAQNIDTGLQELLFQDRIIQGYEHT
Hungary19A-6 MRLDNLLAQEKISRKAMKQALLKGEILVDGCPARSLAQNIDTGLQELLFQDQIIQGYEHT
EF3030 MRLDNLLAQEKVSRKAMKQALLRGEILVDGCPARSLAQNIDTGLQELLFQDRIIQGYEHT
***********:**********:*:**************************:********
TIGR4 YLMLHKPAGAVTANKDKELPTVMDLLPSNIQSDKLYAVGRLDRDTTGLLLLTDNGPLGFQ
D39 YLMLHKPAGVVTANKDKELPTVMDLLPSDIQSDKLYAVGRLDRDTTGLLLLTDNGPLGFQ
D39V YLMLHKPAGVVTANKDKELPTVMDLLPSDIQSDKLYAVGRLDRDTTGLLLLTDNGPLGFQ
Hungary19A-6 YLMLHKSAGVVTANKDRELPTVMDLLPSDIQSDKLYAVGRLDRDTTGLLLLTDNGPLGFQ
EF3030 YLMLHKPAGVVTANKDKELPTVMDLLPSDIQSDKLYAVGRLDRDTTGLLLLTDNGPLGFQ
******.**.******:***********:*******************************
TIGR4 LLHPQYHVDKTYQVEVNGLLTPDHIQTFQKGIVFLDDTVCKPAKLEILSASPSLSQASIT
D39 LLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIVFLDGTVCKPAKLEILSASPSISQASIT
D39V LLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIVFLDGTVCKPAKLEILSASPSISQASIT
Hungary19A-6 LLHPQYHVDKTYQVEVNGLLTPDHIQTFQKGIVFLDGTICKPARLEILSASPSLSQASIT
EF3030 LLHPQYHVDKTYQVEVNGLLTPDHIQAFQKGIVFLDGTVCKPAKLEILSASPSLSQASIT
**************************:*********.*:****:*********:******
TIGR4 ISEGKFHQIKKMFLSVGVKVTSLKRIQFGDFTLNPDLAEGNYRPLNQKELQIIKNYLEMS
D39 ISEGKFHQIKKMFLSVGVKVTSLKRIQFGDFTLNPDLAESNYRPLNQKELQIIKNYLEMS
D39V ISEGKFHQIKKMFLSVGVKVTSLKRIQFGDFTLNPDLAESNYRPLNQKELQIIKNYLEMS
Hungary19A-6 ISEGKFHQIKKMFLSVGVKVTSLKRIQFGDFTLNPDLAEGNYRPLNQKELQIIKNYLEMS
EF3030 ISEGKFHQIKKMFLSVGVKVTSLKRIQFGDFTLNPDLAEGNYRPLNQKELQIIKNYLEMS
***************************************.********************
TIGR4 R
D39 R
D39V R
Hungary19A-6 R
EF3030 R
*