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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001611000
- symbol?: cbpL
- synonym:
- description?: N-acetylmuramoyl-L-alanine amidase family protein
- N-acetylmuramoyl-L-alanine amidase family protein
- choline binding protein
- Pneumococcal surface protein
- lysozyme
- excalibur domain family
- conserved hypothetical protein
- pneumococcal surface protein, putative
- Putative endo-beta-N-acetylglucosaminidase
- Endo-beta-N-acetylglucosaminidase
- Endo-beta-N-acetylglucosaminidase, choline-binding protein CbpL
- excalibur calcium-binding domain protein
- excalibur domain protein
- hypothetical protein (pseudogene)
- Ltp family lipoprotein
- putative pneumococcal surface protein
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1962801..1966456
- occurrence?: in 93% of 41 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MNKRLFSKMSLVTLPILALFSQSVLAEENIHFSSCKEAWANGYSDIHEGEPGYSAKLDRD
D39 MNKRLFLKMSLVTLPILALFSQPVLAEENIHFSSCKEAWANGYSDIHEGEPGYSAKLDRD
D39V MNKRLFLKMSLVTLPILALFSQPVLAEENIHFSSCKEAWANGYSDIHEGEPGYSAKLDRD
EF3030 MNKRLFLKMSLVTLPILALFSQPVLAEENIHFSSCKEAWANGYSDIHEGEPGYSAKLDRD
****** ***************.*************************************
TIGR4 HDGVACELKNAPKGAFKAKQSTAIQINTSSATTSGWVKQDGAWYYFDGNGNLVKNAWQGS
D39 HDGVACELKNAPKGAFKAKQSTAIQINTSSATTSGWVKQDGAWYYFDGNGNLVKNAWQGS
D39V HDGVACELKNAPKGAFKAKQSTAIQINTSSATTSGWVKQDGAWYYFDGNGNLVKNAWQGS
EF3030 HDGVACELKNAPKGAFKAKQSTAIQINTSSATTSGWVKQDGAWYYFDGNGNLVKNAWQGS
************************************************************
TIGR4 YYLKADGKMAQSEWIYDSSYQAWYYLKSDGSYAKNAWQGAYYLKSNGKMAQGEWVYDSSY
D39 YYLKADGKMAQSEWIYDSSYQAWYYLKSDGSYAKNAWQGAYYLKSNGKMAQGEWVYDSSY
D39V YYLKADGKMAQSEWIYDSSYQAWYYLKSDGSYAKNAWQGAYYLKSNGKMAQGEWVYDSSY
EF3030 YYLKADGKMAQSEWIYDSSYQAWYYLKSDGSYAKNAWQGAYYLKSNGKMAQGEWVYDSSY
************************************************************
TIGR4 QAWYYLKSDGSYARNAWQGNYYLKSDGKMAKGEWVYDATYQAWYYLTSDGSYAYSTWQGN
D39 QAWYYLKSDGSYARNAWQGNYYLKSDGKMAKGEWVYDATYQAWYYLTSDGSYAYSTWQGN
D39V QAWYYLKSDGSYARNAWQGNYYLKSDGKMAKGEWVYDATYQAWYYLTSDGSYAYSTWQGN
EF3030 QAWYYLKSDGSYARNAWQGNYYLKSDGKMAKGEWVYDATYQAWYYLTSDGSYAYSTWQGN
************************************************************
TIGR4 YYLKSDGKMAVNEWVDGGRYYVGADGVWKEVQASTASSSNDSNSEYSAALGKAKSYNSLF
D39 YYLKSDGKMAVNEWVDGGRYYVGADGVWKEGQASTASSSNDSNSEYSAALGKAKSYNSLF
D39V YYLKSDGKMAVNEWVDGGRYYVGADGVWKEGQASTASSSNDSNSEYSAALGKAKSYNSLF
EF3030 YYLKSDGKMAVNEWVDGGRYYVGADGVWKEGQASTVSSSNDSNSEYSAALGKAKSYNSLF
****************************** ****.************************
TIGR4 HMSKKRMYRQLTSDFDKFSNDAAQYAIDHLDD
D39 HMSKKRMYRQLTSDFDKFSNDAAQYAIDH---
D39V HMSKKRMYRQLTSDFDKFSNDAAQYAIDH---
EF3030 HMSKKRMYRQLTSDFDKFSNDAAQYAIDHLDD
*****************************