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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001798000
- symbol?: pnrD
- synonym:
- description?: ABC transporter permease
- ABC transporter permease
- ABC transporter membrane-spanning permease - ribose/galactose transport
- ABC transporter permease protein
- ABC transporter, membrane-spanning permease
- sugar ABC transporter, permease protein, putative
- sugar ABC transporter permease
- (Putative) permease in nucleoside-specific ABC transporter PnrABCD
- ABC transporter%2C membrane-spanning permease
- ABC transporter, permease protein
- ABC transporter, permease protein, carbohydrate uptake 2 (CUT2) family
- branched-chain amino acid ABC transporter, permease protein
- branched-chain amino acid transport system / permease component family protein
- Putative deoxyribose-specific ABC transporter,permease protein
- putative sugar ABC transporter, permease protein
- Uncharacterized ABC-type transport system, permease component
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2253201..2254160
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MSIITLLPLLVSSMLIYSAPLIFTSIGGVFSERGGVVNVGLEGIMVMGAFSGVVFNLEFA
D39 MSIITLLPLLVSSMLIYSAPLIFTSIGGVFSERGGVVNVGLEGIMVMGAFSGVVFNLEFA
D39V MSIITLLPLLVSSMLIYSAPLIFTSIGGVFSERGGVVNVGLEGIMVMGAFSGVVFNLEFA
Hungary19A-6 MSIITLLPLLVSSMLIYSAPLIFTSIGGVFSERGGVVNVGLEGIMVMGAFSGVVFNLEFA
EF3030 -------------MLIYSAPLIFTSIGGVFSERGGVVNVGLEGIMVMGAFSGVVFNLEFA
***********************************************
TIGR4 EQFGAATPWLSLLVAGLVGSVFSIIHAAATVHFRADHVVSGTVLNLMAPALAVFLVKVLY
D39 EQFGAATPWLSLLVAGLVGSVFSIIHAAATVHFRADHVVSGTVLNLMAPALAVFLVKVLY
D39V EQFGAATPWLSLLVAGLVGSVFSIIHAAATVHFRADHVVSGTVLNLMAPALAVFLVKVLY
Hungary19A-6 EQFGAATPWLSLLVAGLVGSVFSIIHAAATVHFRADHVVSGTVLNLMAPALAVFLVKVLY
EF3030 EQFGAATPWLSLLVAGLVGSVFSIIHAAATVHFRADHVVSGTVLNLMAPALAVFLVKVLY
************************************************************
TIGR4 NKGQTDNLSQTFGRFDFPVLANIPVIGDIFFKSTSLLGYLAIAFSFLAWFILFKTQFGLR
D39 NKGQTDNLSQTFGRFDFPVLANIPVIGDIFFKSTSLLGYLAIAFSFLAWFILFKTQFGLR
D39V NKGQTDNLSQTFGRFDFPVLANIPVIGDIFFKSTSLLGYLAIAFSFLAWFILFKTQFGLR
Hungary19A-6 NKGQTDNLSQTFGRFDFPVLANIPVIGDIFFKSTSLLGYLAIAFSFLAWFILFKTQFGLR
EF3030 NKGQTDNLSQTFGRFDFPVLANIPVIGDIFFKSTSLLGYLAIAFSFLAWFILFKTQFGLR
************************************************************
TIGR4 LRSVGEHPQAADTLGINVY-KMRYLGVIISGFLGGIGGAIYAQSISVNFSVTTIVGPGFI
D39 LRSVGEHPQAADTLGINVY-KMRYLGVIISGFLGGIGGAIYAQSISVNFSVTTIVGPGFI
D39V LRSVGEHPQAADTLGINVY-KMRYLGVIISGFLGGIGGAIYAQSISVNFSVTTIVGPGFI
Hungary19A-6 LRSVGEHPQAADTLGINVY-KMRYLGIIISGFLGGIGGAIYAQSISVNFSVTTIVGPGFI
EF3030 LRSVGEHPQAADTLGINVYKKMRYLGIIISGFLGGIGGAIYAQSISVNFSVTTIVGPGFI
******************* ******:*********************************
TIGR4 ALAAMIFGKWNPIGAMLSSLFFGLSQSLAVIGSQLPFLQGVPAVYLQIAPYVLTILVLAA
D39 ALAAMIFGKWNPIGAMLSSLFFGLSQSLAVIGSQLPFLQGVPAVYLQIAPYVLTILVLAA
D39V ALAAMIFGKWNPIGAMLSSLFFGLSQSLAVIGSQLPFLQGVPAVYLQIAPYVLTILVLAA
Hungary19A-6 ALAAMIFGKWNPIGAMLSSLFFGLSQSLAVIGSQLPFLQGVPAVYLQIAPYVLTILVLAA
EF3030 ALAAMIFGKWNPIGAMLSSLFFGLSQSLAVIGSQLPFLQGVPAVYLQIAPYVLTILVLAA
************************************************************
TIGR4 FFGKAVAPKADGINYIKSK
D39 FFGKAVAPKADGINYIKSK
D39V FFGKAVAPKADGINYIKSK
Hungary19A-6 FFGKAVAPKADGINYIKSK
EF3030 FFGKAVAPKADGINYIKSK
*******************