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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001841000
- symbol?: thiI
- synonym:
- description?: tRNA uracil 4-sulfurtransferase ThiI
- tRNA uracil 4-sulfurtransferase ThiI
- thiamine biosynthesis/tRNA modification protein ThiI
- putative thiamine biosynthesis protein
- putative tRNA sulfurtransferase
- Thiamine biosynthesis ATP pyrophosphatase
- thiamine biosynthesis protein ThiI
- tRNA 4-thiouridine(8) synthase ThiI
- Probable thiamine biosynthesis protein thiI
- Thiamin biosynthesis protein
- thiazole biosynthesis protein ThiI
- tRNA 4-thiouridine synthase ThiI
- tRNA S(4)U 4-thiouridine synthase (former ThiI)
- tRNA sulfurtransferase ThiI
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2304365..2305579
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
(12F)
ASP0581:
EL334_RS04350 (thiI)
(19F)
ATCC 49619:
EL263_RS04355 (thiI)
(23F)
ATCC 700669:
SPN23F_RS04100 (thiI)
(14)
INV200:
SPNINV200_RS04195 (thiI)
(14)
JJA:
SPJ_RS04100 (thiI)
(19F)
MDRSPN001:
MDRSPN_RS05860 (thiI)
(19A)
SP49:
BMJ42_RS04995 (thiI)
(1)
SPN032672:
SPN032672_RS10535 (thiI)
(3)
SPN034156:
SPN034156_RS10190 (thiI)
(3)
SPN034183:
SPN034183_RS04275 (thiI)
(3)
SPN994038:
SPN994038_RS04200 (thiI)
(3)
SPN994039:
SPN994039_RS04200 (thiI)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MQYSEIMIRYGELSTKGKNRMRFINKLRNNISDVLSIYTQVKVTADRDRAHAYLNGADYT
D39 MQYSEIMIRYGELSTKGKNRMRFINKLRNNISDVLSIYSQVKVTADRDRAHAYLNGADYT
D39V MQYSEIMIRYGELSTKGKNRMRFINKLRNNISDVLSIYSQVKVTADRDRAHAYLNGADYT
Hungary19A-6 MQYSEIMIRYGELSTKGKNRMRFINKLRNNISDVLSIYAQVKVTADRDRAHAYLNGADYT
EF3030 MQYSEIMIRYGELSTKGKNRMRFINKLRNNISDVLSIYTQVKVTADRDRAHAYLNGADYT
**************************************:*********************
TIGR4 AVAESLKQVFGIQNFSPVYKVEKSVEVLKSSVQEIMRDIYKEGMTFKISSKRSDHNFELD
D39 AVAESLKQVFGIQNFSPVYKVEKSVEVLKSSVQEIMRDIYKEGMTFKISSKRSDHNFELD
D39V AVAESLKQVFGIQNFSPVYKVEKSVEVLKSSVQEIMRDIYKEGMTFKISSKRSDHNFELD
Hungary19A-6 AVAESLKQVFGIQNFSPVYKVEKSVEVLKSSVQEIMRDIYKEGMTFKISSKRSDHNFELD
EF3030 AVAESLKQVFGIQNFSPVYKVEKSVEVLKSSVQEIMRDIYKEGMTFKISSKRSDHNFELD
************************************************************
TIGR4 SRELNQTLGGAVFEAIPNVQVQMKSPDINLQVEIREEAAYLSYETIRGAGGLPVGTSGKG
D39 SRELNQTLGGAVFEAIPNVQVQMKSPDINLQVEIREEAAYLSYETIRGAGGLPVGTSGKG
D39V SRELNQTLGGAVFEAIPNVQVQMKSPDINLQVEIREEAAYLSYETIRGAGGLPVGTSGKG
Hungary19A-6 SRELNQTLGGAVFEAIPNVQVQMKSPDINLQVEIREEAAYLSYETIRGAGGLPVGTSGKG
EF3030 SRELNQTLGGAVFEAIPNVQVQMKSPDINLQVEIREEAAYLSYETIRGAGGLPVGTSGKG
************************************************************
TIGR4 MLMLSGGIDSPVAGYLALKRGVDIEAVHFASPPYTSPGALKKAQDLTRKLTKFGGNIQFI
D39 MLMLSGGIDSPVAGYLALKRGVDIEAVHFASPPYTSPGALKKAQDLTRKLTKFGGNIQFI
D39V MLMLSGGIDSPVAGYLALKRGVDIEAVHFASPPYTSPGALKKAQDLTRKLTKFGGNIQFI
Hungary19A-6 MLMLSGGIDSPVAGYLALKRGVDIEAVHFASPPYTSPGALKKAQDLTRKLTKFGGNIQFI
EF3030 MLMLSGGIDSPVAGYLALKRGVDIEAVHFASPPYTSPGALKKAQDLTRKLTKFGGNIQFI
************************************************************
TIGR4 EVPFTEIQEEIKAKAPEAYLMTLTRRFMMRITDRIREVRNGLVIINGESLGQVASQTLES
D39 EVPFTEIQEEIKAKAPEAYLMTLTRRFMMRITDRIREVRNGLVIINGESLGQVASQTLES
D39V EVPFTEIQEEIKAKAPEAYLMTLTRRFMMRITDRIREVRNGLVIINGESLGQVASQTLES
Hungary19A-6 EVPFTEIQEEIKAKAPEAYLMTLTRRFMMRITDRIREVRNGLVIINGESLGQVASQTLES
EF3030 EVPFTEIQEEIKAKAPEAYLMTLTRRFMMRITDRIREVRNGLVIINGESLGQVASQTLES
************************************************************
TIGR4 MKAINAVTNTPIIRPVVTMDKLEIIDIAQEIDTFDISIQPFEDCCTIFAPDRPKTNPKIK
D39 MKAINAVTNTPIIRPVVTMDKLEIIDIAQEIDTFDISIQPFEDCCTIFAPDRPKTNPKIK
D39V MKAINAVTNTPIIRPVVTMDKLEIIDIAQEIDTFDISIQPFEDCCTIFAPDRPKTNPKIK
Hungary19A-6 MKAINAVTNTPIIRPVVTMDKLEIIDIAQEIDTFDISIQPFEDCCTIFAPDRPKTNPKIK
EF3030 MKAINAVTNTPIIRPVVTMDKLEIIDIAQEIDTFDISIQPFEDCCTIFAPDRPKTNPKIK
************************************************************
TIGR4 NAEQYEARMDVEGLVERAVAGIMITEITPQAEKDEVDDLIDNLL
D39 NAEQYEARMDVEGLVERAVAGIMITEITPQAEKDEVDDLIDNLL
D39V NAEQYEARMDVEGLVERAVAGIMITEITPQAEKDEVDDLIDNLL
Hungary19A-6 NAEQYEARMDVEGLVERAVAGIMITEITPQAEKDEVDDLIDNLL
EF3030 NAEQYEARMDVEGLVERAVAGIMITEITPQAEKDEVDDLIDNLL
********************************************