Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001891000
- symbol?: ABC-MSD_3
- synonym:
- description?: ABC transporter permease
- ABC transporter permease
- ABC transporter, permease protein
- ABC-type antimicrobial peptide transport system, permease component
- Bacitracin export permease protein BceB
- ABC transporter, membrane-spanning protein
- ABC transporter permease protein
- peptide ABC transporter permease
- putative ABC transporter, permease protein
- ABC transporter%2C membrane-spanning protein
- ABC transporter, permease protein, putative
- ABC transporter membrane-spanning permease - unknown substrate
- efflux ABC transporter, permease protein
- ftsX-like permease family protein
- transporter, permease protein, putative
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2365288..2367276
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MFRLTNKLAVSNLIKNRKLYYPFALAVLLAVTITYLFYSLTFNPKIAEIRGGTTIQATLG
D39 MFRLTNKLAVSNLIKNRKLYYPFALAVLLAVTVTYLFYSLTFNPKIAEIRGGTTIQATLG
D39V MFRLTNKLAVSNLIKNRKLYYPFALAVLLAVTVTYLFYSLTFNPKIAEIRGGTTIQATLG
Hungary19A-6 MFRLTNKLAVSNLIKNRKLYYPFALAVLLAVTVTYLFYSLTFNPKIAEIRGGTTIQATLG
EF3030 MFRLTNKLAVSNLIKNRKLYYPFALAVLLAVTVTYLFYSLTFNPKIAEIRGGTTIQATLG
********************************:***************************
TIGR4 FGMFVVTLASAIIVLYANSFVMKNRSKELGIYGMLGLEKRHLISMTFKELVVFGILTVGA
D39 FGMFVVTLASAIIVLYANSFVMKNRSKELGIYGMLGLEKRHLISMTFKELVVFGILTVGA
D39V FGMFVVTLASAIIVLYANSFVMKNRSKELGIYGMLGLEKRHLISMTFKELVVFGILTVGA
Hungary19A-6 FGMFVVTLASAIIVFYANSFVMKNRSKELGIYGMLGLEKRHLISMTFKELVVFGILTVGA
EF3030 FGMFVVTLASAIIVLYANSFVMKNRSKELGIYGMLGLEKRHLISMTFKELVVFGILTVGA
**************:*********************************************
TIGR4 GIGIGALFDKLIFAFLLKLMKLKVELVATFQMNVVIAVLVVFGLIFLGLMFLNALRIARM
D39 GIGIGALFDKLIFAFLLKLMKLKVELVATFQTKVVITVLVVFGLIFLGLMFLNALRIARM
D39V GIGIGALFDKLIFAFLLKLMKLKVELVATFQTKVVITVLVVFGLIFLGLMFLNALRIARM
Hungary19A-6 GIGIGALFDKLIFAFLLKLMKLKVELVATFQTKVVITVLVVFGLIFLGLMFLNALRIARM
EF3030 GIGIGALFDKLIFAFLLKLMKLKVELVATFQMNVVIAVLVVFGLIFLGLMFLNALRIARM
******************************* :***:***********************
TIGR4 NALQLSREKASGEKRGRFLPLQTILGSISLGIGYYLALTVTDPLTALTTFFLAVLLVIFG
D39 NALQLSREKASGEKKGRFLPLQTILGSISLGIGYYLALTVKDPLTALTTFFIAVLLVIFG
D39V NALQLSREKASGEKKGRFLPLQTILGSISLGIGYYLALTVKDPLTALTTFFIAVLLVIFG
Hungary19A-6 NALQLSREKASGEKKGRFLPLQTILGSISLGIGYYLALTVKDPLTALTTFFIAVLLVIFG
EF3030 NALQLSREKASGEKRGRFLPLQTILGSISLGIGYYLALTVTDPLTALTTFFLAVLLVIFG
**************:*************************.**********:********
TIGR4 TYLLFNAGITVFLQILKKNKKYYYQPNNLISVSNLIFRMKKNAVGLATIAILSTMVLVTM
D39 TYLLFNAGITVFLQILKKNKKYYYQPNNLISVSNLIFRMKKNAVGLATIAILSTMVLVTM
D39V TYLLFNAGITVFLQILKKNKKYYYQPNNLISVSNLIFRMKKNAVGLATIAILSTMVLVTM
Hungary19A-6 TYLLFNAGITVFLQILKKNKKYYYQPNNLISVSNLIFRMKKNAVGLATIAILSTMVLVTM
EF3030 TYLLFNAGITVFLQILKKNKKYYYQPNNLISVSNLIFRMKKNAVGLATIAILSTMVLVTM
************************************************************
TIGR4 SAATSIFNSAESFKKVLNPHDFGVSGQNVEKEDLDKLLSQFASDKGYSVKEKEVLRYSNF
D39 SAATSIFNSSESFKKVLNPHDFGVSGQNVEKEDLDKLLSQFASDKGYKIKEKEVFRYTYF
D39V SAATSIFNSSESFKKVLNPHDFGVSGQNVEKEDLDKLLSQFASDKGYKIKEKEVFRYTYF
Hungary19A-6 SAATSIFNSSESFKKVLNPHDFGVSGQNVEKEDLDKLLSQFASDKGYKIKEKEVFRYTYF
EF3030 SAATSIFNSAESFKKVLNPHDFGVSGQNVEKEDLDKLLSQFASDKGYSVKEKEVLRYSNF
*********:*************************************.:*****:**: *
TIGR4 GIANQEGTKLTIFEKGQNRVQPTTVFMVFDQKDYENMTGQKLSLSGNEVGLFAKNDGLKG
D39 AVANQEGTKLTIFEKGQNRVQPKTVFMVFDQKDYENMTGQKLSLSGNEVGLFAKNEGVKE
D39V AVANQEGTKLTIFEKGQNRVQPKTVFMVFDQKDYENMTGQKLSLSGNEVGLFAKNEGVKE
Hungary19A-6 AVANQEGTELTIFEKGQNRVQPKTIFMVFDQKDYENMTGQKLSLSGNEVGLFAKNEGVKE
EF3030 GIANQEGTKLTIFEKGQNRVQPTTVFMVFDQKDYENMTGQKLSLSGNEVGLFAKNDGLKG
.:******:*************.*:******************************:*:*
TIGR4 QKALTLNDHQFSVKEEFNKDFIVNHVPNKFNILTTDYNYLVVPDLQAFLDQFPDSAIYNQ
D39 QKALTLNDHQFSVKEEFTKDFIVNHVPNQFNILTADYNYLVVPDLQAFLDQFPDSAIYNQ
D39V QKALTLNDHQFSVKEEFTKDFIVNHVPNQFNILTADYNYLVVPDLQAFLDQFPDSAIYNQ
Hungary19A-6 QKTLILNDHQFSVKEEFNKDFIVKHVPNQFNILTADYNYLVVPDLQAFLNQFPDSAIYNQ
EF3030 QKALTLNDHQFSVKEEFNKDFIVNHVPNKFNILTTDYNYLVVPDLQAFLDQFPDSAIYNQ
**:* ************.*****:****:*****:**************:**********
TIGR4 FYGGMNVNVSEEEQLKVAEEYENYLNQFNAQLDTEGSYVYGSNLADASSQMSALFGGVFF
D39 FYGGMNVNASEAEQLKVAEEYEKYLQKFNAQLNTEGNYVYGSTLADASAQMSALFGGVFF
D39V FYGGMNVNASEAEQLKVAEEYEKYLQKFNAQLNTEGNYVYGSTLADASAQMSALFGGVFF
Hungary19A-6 FYGGMNVNVSEEEQLKVAEEYEKYLQKFNAQLNTEGNYVYGSTLADASAQMSVLFGGVFF
EF3030 FYGGMNVNVSEEEQLKVAEEYENYLNQFNAQLDTEGSYVYGSNLADASSQMSALFGGVFF
********.** **********:**::*****:***.*****.*****:***.*******
TIGR4 IGIFLSIIFMVGTVLVIYYKQISEGYEDRERFIILQKVGLDQKQIKQTINKQVLTVFFLP
D39 IGIFLSIIFMVGTVLVIYYKQISEGYEDRERFIILQKVGLDQKQIKQTINKQVLTVFFLP
D39V IGIFLSIIFMVGTVLVIYYKQISEGYEDRERFIILQKVGLDQKQIKQTINKQVLTVFFLP
Hungary19A-6 IGIFLSIIFMVGTVLVIYYKQISEGYEDRERFIILQKVGLDQKQIKQTINKQVLTVFFLP
EF3030 IGIFLSIIFMVGTVLVIYYKQISEGYEDRERFIILQKVGLDQKQIKQTINKQVLTVFFLP
************************************************************
TIGR4 LLFAFIHLAFAYHMLSLILKVIGVLDTTMMLIVTLSICAIFLIAYVLIFMITSRSYRKIV
D39 LLFAFLHLAFAYHMLSLILKVIGVLDTTMMLIVTLSICAIFLIAYVLIFMITSRSYRKIV
D39V LLFAFLHLAFAYHMLSLILKVIGVLDTTMMLIVTLSICAIFLIAYVLIFMITSRSYRKIV
Hungary19A-6 LLFAFLHLAFAYHMLSLILKVIGVLDTTMMLIVTLSICAIFLIAYVLIFMITSRSYRKIV
EF3030 LLFAFIHLAFAYHMLSLILKVIGVLDTTMMLIVTLSICAIFLIAYVLIFMITSRSYRKIV
*****:******************************************************
TIGR4 QM
D39 QM
D39V QM
Hungary19A-6 QM
EF3030 QM
**