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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001893000
- symbol?: —
- synonym:
- description?: IS30 family transposase
- IS30 family transposase
- transposase
- putative IS1239 transposase
- putative IS1239 transposase (pseudogene)
- IS1239 transposase
- integrase
- integrase core domain protein
- Degenerate transposase
- IS1239, transposase
- IS1239, transposase, putative
- IS30 family transposase ISSpn8
- ISSpn8 transposase
- Mobile element protein
- putative IS1239, transposase
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 2367939..2369067
- occurrence?: in 95% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MQNHYTTKGEHLTIDSRRLIERWKKEGKSNREIASLLGKVPQTIHTEIKRGTVRQCLGKG
D39 MQDNYTTKAKHLTIDSRRLIERWKKEGKSNREIASLLGKAPQTIHTEIKRRTVRKCLGKG
D39V MQDNYTTKAKHLTIDSRRLIERWKKEGKSNREIASLLGKAPQTIHTEIKRRTVRKCLGKG
EF3030 MQDNYTTKAKHLTIDSRRLIERWKKEGKSNREIASLLGKVPQTIHTEIKRGTVRQCLGKG
**::****.:*****************************.********** ***:*****
TIGR4 RFKEVYSADYAQQSYENNRKRSVKKSSLTKELKEKILHYHNQKFSPEMMVMAKGVNVGIS
D39 RFKEVYSADYAQQSYENNRKHSVKKSSLTKELKEKILHYHNQKFSPD-------------
D39V RFKEVYSADYAQQSYENNRKHSVKKSSLTKELKEKILHYHNQKFSPD-------------
EF3030 RFKEVYSADYAQQSYENNRKRSVKKSSLTKELKEKILHYHNQKFSPEMMVMAKGVNVGIS
********************:*************************:
TIGR4 TIYYWIHHGKLGLSKQDLLYPRKGKALKKQASTNFKPAGQSIEQRLEAINFRLENGHYEI
D39 ---------------------------KKQASTNFKPAGQSIEQRSEAINLRLENGYYEI
D39V ---------------------------KKQASTNFKPAGQSIEQRSEAINLRLENGYYEI
EF3030 TIYYWIHHGKLGLSKQDLLYPRKGKALKKQASTNFKPAGQSIEQRLEAINFRLENGHYEI
****************** ****:*****:***
TIGR4 DTVLLTRAKNYCLLVLTDRKSRHQIIRLIPNKSADVVNQALKLILKQHKILSITADNGTE
D39 DTVLLTRAKNYCLLVLTDRKSRHQIIRLIPNKSAEVVNQALKLILKQHKILSITADNGTE
D39V DTVLLTRAKNYCLLVLTDRKSRHQIIRLIPNKSAEVVNQALKLILKQHKILSITADNGTE
EF3030 DTVLLTRAKNYCLLVLTDRKSRHQIIRLIPNKSADVVNQALKLILKQHKILSITADNGTE
**********************************:*************************
TIGR4 FNRLSNVFSEEHIYYAHPYASWERGTNENHNRLIRRWLPKGTKKMTPKEVAFIEKWINNY
D39 FNRLFDVFSEEHIYYAHPYASWERGTNENHNRLIRRWLPKGTKKMTPKEVAFIEKWINNY
D39V FNRLFDVFSEEHIYYAHPYASWERGTNENHNRLIRRWLPKGTKKMTPKEVAFIEKWINNY
EF3030 FNRLSNVFSEEHIYYAHPYASWERGTNENHNRLIRRWLPKGTKKMTPKEVAFIEKWINNY
**** :******************************************************
TIGR4 PKKCLDYKSPREDFLMANLNLKFSVRNKSRN
D39 PKKCLDYKSPREDFWMANLNLKFSVRNKSRN
D39V PKKCLDYKSPREDFWMANLNLKFSVRNKSRN
EF3030 PKKCLDYKSPREDFLMANLNLKFSVRNKSRN
************** ****************