PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN002051000
• symbol^?: rlmCD
• synonym: rlmD
• description^?: 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD

  descriptions from strain specific annotations:

  • 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  • 23S rRNA (uracil-5-)-methyltransferase RumA
  • putative RNA methyltransferase
  • 23S rRNA (uracil-C(5))-methyltransferase RlmCD
  • RNA methyltransferase
  • RNA methyltransferase, TrmA family
  • 23S rRNA (uracil(1939)-C(5))-methyltransferase
  • 23S rRNA (Uracil-5-)-methyltransferase RumA ## LSU rRNA m(5)U1939
  • Conserved hypothetical protein
  • SAM-dependent methyltransferase
• strand^?: +
• coordinates^?: 2538214..2539577
• occurrence^?: in 100% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS05105 (rlmD)
(2)
D39:
SPD_RS04910 (rlmD)
(2)
D39V:
SPV_RS05430 (rlmD)
(19A)
Hungary19A-6:
SPH_RS05480 (rlmD)
(19F)
EF3030:
EF3030_RS04970 (rlmD)
(6B)^?
670-6B:
SP670_RS06390 (rlmD)
(6A)
6A-10:
HKM25_RS04880 (rlmD)
(5)
70585:
SP70585_RS05320 (rlmD)
(19F)
A026:
T308_RS05075 (rlmD)
(3)
A66:
A66_RS04655 (rlmD)
(11A)
AP200:
SPAP_RS05790 (rlmD)
(12F)
ASP0581:
EL334_RS05145 (rlmD)
(19F)
ATCC 49619:
EL263_RS05100 (rlmD)
(23F)
ATCC 700669:
SPN23F_RS04845 (rlmD)
(19F)
BM6001:
ODS73_RS05305 (rlmD)
(1)
BVJ1JL:
JN057_RS04935 (rlmD)
(14)
CGSP14:
SPCG_RS05220 (rlmD)
(19F)
G54:
SPG_RS04790 (rlmD)
(1)
gamPNI0373:
HMPREF1038_RS05710 (rlmD)
(3)
HU-OH:
EL271_RS04825 (rlmD)
(19A)
Hu15:
SPNHU15_RS05035 (rlmD)
(19A)
Hu17:
SPNHU17_RS04960 (rlmD)
(1)
INV104:
INV104_RS05200 (rlmD)
(14)
INV200:
SPNINV200_RS05065 (rlmD)
(14)
JJA:
SPJ_RS04840 (rlmD)
(19F)
MDRSPN001:
MDRSPN_RS04670 (rlmD)
(1)
NCTC7465:
AT689_RS08680 (rlmD)
(2)
NCTC7466:
DQM66_RS05440 (rlmD)
(4)
NU83127:
EL277_RS05185 (rlmD)
(3)
OXC141:
SPNOXC_RS05015 (rlmD)
(1)
P1031:
SPP_RS05115 (rlmD)
(2)
R6:
SPR_RS04665 (rlmD)
(19A)
SP49:
BMJ42_RS05695 (rlmD)
(1)
SPN032672:
SPN032672_RS00070 (rlmD)
(3)
SPN034156:
SPN034156_RS00070 (rlmD)
(3)
SPN034183:
SPN034183_RS05035 (rlmD)
(3)
SPN994038:
SPN994038_RS04940 (rlmD)
(3)
SPN994039:
SPN994039_RS04945 (rlmD)
(3)
SPNA45:
SPNA45_RS07450 (rlmD)
(19F)
ST556:
MYY_RS05555 (rlmD)
(19F)
Taiwan19F-14:
SPT_RS05345 (rlmD)
(19A)
TCH8431/19A:
HMPREF0837_RS06940 (rlmD)
(4)
Xen35:
CXP32_RS05145 (rlmD)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MLKKNDIVEVEIVDLTHEGAGVAKVDGLVFFVENALPSEKILMRVLKVNKKIGFGKVEKY
  D39             MLKKNDIVEVEIVDLTHEGAGVAKVDGLVFFVENALPSEKILMRVLKVNKKIGFGKVEKY
  D39V            MLKKNDIVEVEIVDLTHEGAGVAKVDGLVFFVENALPSEKILMRVLKVNKKIGFGKVEKY
  Hungary19A-6    MLKKNDIVEVEIVDLTHEGAGVAKVDGLVFFVENALPSEKILMRVLKVNKKIGFGKVEKY
  EF3030          MLKKNDIVEVEIVDLTHEGAGVAKVDGLVFFVENALPSEKILMRVLKVNKKIGFGKVEKY
                  ************************************************************
  
  TIGR4           LVQSPHRNQDLDLAYLRSGIADLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGM
  D39             LVQSPHRNQDLDLAYLRSGIADLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGM
  D39V            LVQSPHRNQDLDLAYLRSGIADLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGM
  Hungary19A-6    LVQSPHRNQDLDLAYLRSGIADLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGM
  EF3030          FVQSPHRNQDLDLAYLRSGIADLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGM
                  :***********************************************************
  
  TIGR4           EHPVKYRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRF
  D39             EHPVKYRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRF
  D39V            EHPVKYRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRF
  Hungary19A-6    EHPVKYRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRF
  EF3030          EHPVKYRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRF
                  ************************************************************
  
  TIGR4           DLKPYDEKEQSGLIRNLVVRRGHYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVM
  D39             DLKPYDEKEQSGLIRNLVVRRGHYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVM
  D39V            DLKPYDEKEQSGLIRNLVVRRGHYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVM
  Hungary19A-6    DLKPYDEKEQSGLIRNLVVRRGHYSGQIMVVLVATRPKVFRVDQLIEQVIKQFPEIVSVM
  EF3030          DLKPYDEKEQSGLIRNLVVRRGHYSGQIMVVLVATRPKVFRVDQLIEQVIKQFPEIVSVM
                  *********************************:**************************
  
  TIGR4           QNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFA
  D39             QNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGLAFYQVNTEMAEKLYQTAIDFA
  D39V            QNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGLAFYQVNTEMAEKLYQTAIDFA
  Hungary19A-6    QNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFA
  EF3030          QNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFA
                  ************************************** *********************
  
  TIGR4           ELKKDDVIIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDT
  D39             ELKKDDVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDT
  D39V            ELKKDDVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDT
  Hungary19A-6    ELKKDDVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDT
  EF3030          ELKKDDVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDT
                  *******:**********************************:***.**:*:********
  
  TIGR4           AENAMKKWLKEGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLY
  D39             AENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLY
  D39V            AENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLY
  Hungary19A-6    AENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLY
  EF3030          AENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLY
                  ******:***:*************************************************
  
  TIGR4           QELGYELKKVQPVDLFPQTHHVETVALLSKLDVDKHISVEIELDEMDLTSAESKATYAQI
  D39             QELGYELKKVQPVDLFPQTHHVETVALLSKLDVDKHISVEIELDEMDLTSAESKATYAQI
  D39V            QELGYELKKVQPVDLFPQTHHVETVALLSKLDVDKHISVEIELDEMDLTSAESKATYAQI
  Hungary19A-6    QELGYELKKVQPVDLFPQTHHVETVALLSKLDVDKHISVEIELDEMNLTSAESKATYAQI
  EF3030          QELGYELKKVQPVDLFPQTHHVETVALLSKLDVDKHISVEIELDEMNLTSAESKATYAQI
                  **********************************************:*************
  
  TIGR4           KEYVWNKFELKVSTLYIAQIKKKCGIELREHYNKSKKDKQIIPQCTPEKEEAIMDALRHF
  D39             KEYVWNKFELKVSTLYIAQIKKKCGIELREHYNKSKKDKQIIPQCTPEKEEAIMDALRHF
  D39V            KEYVWNKFELKVSTLYIAQIKKKCGIELREHYNKSKKDKQIIPQCTPEKEEAIMDALRHF
  Hungary19A-6    KEYVWNKFELKVSTLYIAQIKKKCGIELREHYNKSKKDKQIIPQCTPEKEEAIMDALRHF
  EF3030          KEYVWNKFELKVSTLYIAQIKKKCGIELREHYNKSKKDKQIIPQCTPEKEEAIMDALRHF
                  ************************************************************
  
  TIGR4           KMI
  D39             KMI
  D39V            KMI
  Hungary19A-6    KMI
  EF3030          KMI
                  ***