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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

Summary[edit | edit source]

  • pan ID?: PNEUPAN002096000
  • symbol?: nplT
  • synonym:
  • description?: glycoside hydrolase family 13 protein

      descriptions from strain specific annotations:

    • glycoside hydrolase family 13 protein
    • Neopullulanase
    • alpha amylase N-terminal ig-like domain-containing protein
    • alpha amylase, catalytic domain protein
    • alpha-amylase
    • Glycosidase
    • pseudogene
  • strand?: +
  • coordinates?: 2586921..2588006
  • occurrence?: in 40% of 43 strains

Orthologs[edit | edit source]

Genome Viewer[edit | edit source]

D39
D39V
Hungary19A-6

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.505)


    D39             MELSAIYHGPESEYAYLYKDKKLHIRIRTKKGDIESINLHYGDPFIFMEEFYQDTKEMVK
    D39V            MELSAIYHGPESEYAYLYKDKKLHIRIRTKKGDIESINLHYGDPFIFMEEFYQDTKEMVK
    Hungary19A-6    MELTAIYHRPESEYAYLYKDKKLHIRIRTKKGDIENINLHYGDPFIFMEEFYQDTKKMAK
                    ***:**** **************************.********************:*.*

    D39             ITSGTLFDHWQVEVSVDFARIQYLFELRDTEGQNILYGDKGCVENSLENLHAIGNGFKLP
    D39V            ITSGTLFDHWQVEVSVDFARIQYLFELRDTEGQNILYGDKGCVENSLENLHAIGNGFKLP
    Hungary19A-6    ITSDALFDHWQVEVSVDFARIQYLFELKDTEGQSILYGDKGCVENSLENLRAIGNGFKLP
                    ***.:**********************:*****.****************:*********

    D39             YLHEIDACKVPDWVSNTVWYQIFPERFANGNALLNPEGTLDWDSSVTPKSDDFFGGDLQG
    D39V            YLHEIDACKVPDWVSNTVWYQIFPERFANGNALLNPEGTLDWDSSVTPKSDDFFGGDLQG
    Hungary19A-6    YLHEIDACKVPDWVLNTVWYQIFPERFANGNALLNPEGTLDWDLSITPQSDDFFGGDLQG
                    ************** **************************** *:**:***********

    D39             IIDHMDYLQDLGITGLYLCPIFESTSNHKYNTTDYFEIDRHFGDKETFRELVDQAHHRGM
    D39V            IIDHMDYLQDLGITGLYLCPIFESTSNHKYNTTDYFEIDRHFGDKETFRELVDQAHHRGM
    Hungary19A-6    IIDHLDYLQDLGITGLYLCPIFESTSNHKYNTTDYFEIDRHFGDKDTFRELVEQAHQRGM
                    ****:****************************************:******:***:***

    D39             KVMLDAVFNHIASQSLQWKNVVKNGEQSAYKDWFHIQQFPVTTEKLVNKRDLPYHVFGFE
    D39V            KVMLDAVFNHIASQSLQWKNVVKNGEQSAYKDWFHIQQFPVTTEKLVNKRDLPYHVFGFE
    Hungary19A-6    KIMLDAVFNHIGSQSTQWQDVVQNGEQSAYKDWFHIQQFPVTTEKPANKRDLPYHAFGFE
                    *:*********.*** **::**:********************** .********.****

    D39             DYMPKLNTANPEVKNYLLKVATYWIEEFNIDAWRLDVANEIDHQFWKDFRKAVLAKNPDL
    D39V            DYMPKLNTANPEVKNYLLKVATYWIEEFNIDAWRLDVANEIDHQFWKDFRKAVLAKNPDL
    Hungary19A-6    DYMPKLNTANPEVKDYLLKVATYWIEEFDIDAWRLDVANEIDHQFWKDFRKAVLAKKPDL
                    **************:*************:***************************:***

    D39             YILGEVWHTSQPWLNGDEFHAVMNYPLSDSIKDYFLRGIKKTDQFIDEINGESMYYKQQI
    D39V            YILGEVWHTSQPWLNGDEFHAVMNYPLSDSIKDYFLRGIKKTDQFIDEINGESMYYKQQI
    Hungary19A-6    YILGEVWHTSQPWLNGDEFHAVMNYPLSDSIKDYFLRGIKKTDQFIDEINCQSMYYKQQI
                    ************************************************** :********

    D39             SEVMFNLLDSHDTERILWTANEDVQLVKSALAFLFLQKGTPCIYYVTELALTGGPDPDCR
    D39V            SEVMFNLLDSHDTERILWTANEDVQLVKSALAFLFLQKGTPCIYYVTELALTGGPDPDCR
    Hungary19A-6    SEVMFNLLDSHDTERILWTANEDAQLVKSALAFLFLQKGTPCIYYGTELALTGGPDPDCR
                    ***********************.********************* **************

    D39             RCMPWERVSSDNDMLNFMKRLIKIRKYASVIISHGKYSLQEINSDLVALEWKYEGRILKA
    D39V            RCMPWERVSSDNDMLNFMKRLIKIRKYASVIISHGKYSLQEINSDLVALEWKYEGRILKA
    Hungary19A-6    RCMPWERVSSDNEMLNFMKRLIKIRKHASATIQHGKHSLQEIKADVVALQWKYEGRILKA
                    ************:*************:**. *.***:*****::*:***:**********

    D39             IFNQSTEDYLLEKEAVALASNCQELDNQLVISPDGFMIF-
    D39V            IFNQSTEDYLLEKEAVALASNCQELDNQLVISPDGFMIF-
    Hungary19A-6    IFNQSKEDYYLQKEAVALASNCQEIENQLVISPKGFVIFH
                    *****.*** *:************::*******.**:**