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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002210000
- symbol?: dnaG
- synonym:
- description?: DNA primase
- DNA primase
- DNA primase (bacterial type)
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2776134..2777894
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
(12F)
ASP0581:
EL334_RS05290 (dnaG)
(19F)
ATCC 49619:
EL263_RS05345 (dnaG)
(23F)
ATCC 700669:
SPN23F_RS05060 (dnaG)
(14)
INV200:
SPNINV200_RS06075 (dnaG)
(14)
JJA:
SPJ_RS05050 (dnaG)
(19F)
MDRSPN001:
MDRSPN_RS04825 (dnaG)
(19A)
SP49:
BMJ42_RS05850 (dnaG)
(1)
SPN032672:
SPN032672_RS00245 (dnaG)
(3)
SPN034156:
SPN034156_RS00345 (dnaG)
(3)
SPN034183:
SPN034183_RS05310 (dnaG)
(3)
SPN994038:
SPN994038_RS05215 (dnaG)
(3)
SPN994039:
SPN994039_RS05220 (dnaG)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MVDKQVIEEIKNNANIVEVIGDVISLQKAGRNYLGLCPFHGEKTPSFNVVEDKQFYHCFG
D39 MVDKQVIEEIKNNANIVEVIGDVISLQKAGRNYLGLCPFHGEKTPSFSVVEDKQFYHCFG
D39V MVDKQVIEEIKNNANIVEVIGDVISLQKAGRNYLGLCPFHGEKTPSFSVVEDKQFYHCFG
Hungary19A-6 MVDKQVIEEIKNNANIVEVIGDVISLQKAGRNYLGLCPFHGEKTPSFNVVEDKQFYHCFG
EF3030 MVDKQVIEEIKNNANIVEVIGDVISLQKAGRNYLGLCPFHGEKTPSFNVVEDKQFYHCFG
***********************************************.************
TIGR4 CGRSGDVFKFIEEYQGVPFIEAVQILGQRVGIEVEKPLYSEQKSASPHQALYDMHEDAAK
D39 CGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHEDAAK
D39V CGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHEDAAK
Hungary19A-6 CGRSGDVFKFIEEYQGVPFIEAVQILGQRVGIEVEKPLYSEQKSASPHQDLYDMHEDAAK
EF3030 CGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPYQALYDMHEDAAK
*****************.*:***********************.***:* **********
TIGR4 FYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYREEDLLDS
D39 FYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYREEDLLDS
D39V FYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYREEDLLDS
Hungary19A-6 FYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYREEDLLDS
EF3030 FYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYREEDLLDS
************************************************************
TIGR4 GLFYLSDANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTAIFNKS
D39 GLFYLSDANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTVIFNKS
D39V GLFYLSDANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTVIFNKS
Hungary19A-6 GLFYLSDANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTAIFNKS
EF3030 GLFYLSDANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTAIFNKS
******************************************************.*****
TIGR4 YELYHMDRAKRSSGKASEIYLMEGFMDVIAAYRAGIENAVASMGTALSREHVEHLKRLTK
D39 YELYHMDRAKRSSGKASEIYLMEGFMDVIAAYRAGIENAVASMGTALSREHVEHLKRLTK
D39V YELYHMDRAKRSSGKASEIYLMEGFMDVIAAYRAGIENAVASMGTALSREHVEHLKRLTK
Hungary19A-6 YELYHMDRAKRSSGKASEIYLMEGFMDVIAAYRAGIENAVASMGTALSREHVEHLKRLTK
EF3030 YELYHMDRAKKSSGKTSEIYLMEGFMDVIAAYRAGIENAVASMGTALSREHVEHLKRLTK
**********:****:********************************************
TIGR4 KLVLVYDGDKAGQAATLKALDEIGDMPVQIVSMPDNLDPDEYLQKNGPEDLAYLLTKTRI
D39 KLVLVYDGDKAGQAATLKALDEIGDMPVQIVSMPDNLDPDEYLQKNGPEDLAYLLTKTRI
D39V KLVLVYDGDKAGQAATLKALDEIGDMPVQIVSMPDNLDPDEYLQKNGPEDLAYLLTKTRI
Hungary19A-6 KLVLVYDGDKAGQAATLKALDEIGDMPVQIVSMPDNLDPDEYLQKNGPEDLAYLLTKTRI
EF3030 KLVLVYDGDKAGQAAILKALDEIGDMPVQIVSMPDNLDPDEYLQKNGPEDLAYLLTKTRI
*************** ********************************************
TIGR4 SPIEFYIHQYKPENSENLQAQIEFLEKIAPLIVQEKSIAAQNSYIHILADSLASFDYTQI
D39 SPIEFYIHQYKPENGENLQAQIEFLEKIAPLIVQEKSIAAQNSYIHILADSLASFDYTQI
D39V SPIEFYIHQYKPENGENLQAQIEFLEKIAPLIVQEKSIAAQNSYIHILADSLASFDYTQI
Hungary19A-6 SPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAAQNSYIHILADSLASFDYTQI
EF3030 SPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAAQNSYIHILADSLASFDYTQI
**************.*********:***********************************
TIGR4 EQIVNESRQVQRQNRMEGISRPTPITMPVTKQLSAIMRAEAHLLYRMMESPLVLNDYRLR
D39 EQIVNESRQVQRQNRMERISRPTPITMPVTKQLSAIMRAEAHLLYRMMESPLVLNDYRLR
D39V EQIVNESRQVQRQNRMERISRPTPITMPVTKQLSAIMRAEAHLLYRMMESPLVLNDYRLR
Hungary19A-6 EQIVNESRQVQRQNRMERISRPTPITMPVTKQLSAIMRAEAHLLYRMMESPLVLNDYRLR
EF3030 EQIVNESRQVQRQNRMERISRPTPITMPVTKQLSAIMRAEAHLLYRMMESPLVLNDYRLR
***************** ******************************************
TIGR4 EDFAFATPEFQVLYDLLGQYGNLPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSEVE
D39 EDFAFATPEFQVLHDLLGQYGNLPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSEVE
D39V EDFAFATPEFQVLHDLLGQYGNLPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSEVE
Hungary19A-6 EDFAFATPEFQVLYDLLGQYGNLPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSEVE
EF3030 EDFAFATPEFQVLYDLLGQYGNLPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSEVE
*************:**********************************************
TIGR4 MTRNKALLNQDNMRIKKKVQEASHVGDTDTALEELERLISQKRRME
D39 MTRNKALLNQDNMRIKKKVQEASHVGDTDTALEELERLISQKRRME
D39V MTRNKALLNQDNMRIKKKVQEASHVGDTDTALEELERLISQKRRME
Hungary19A-6 MTRNKALLNQDNMRIKKKVQEASHVGDTDTALEELERLISQKRRME
EF3030 MTRNKALLNQDNMRIKKKVQEASHVGDTDTALEELERLISQKRRME
**********************************************