PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN002211000
• symbol^?: rpoD
• synonym:
• description^?: RNA polymerase sigma factor RpoD

  descriptions from strain specific annotations:

  • RNA polymerase sigma factor RpoD
  • RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
  • RNA polymerase sigma factor SigA
  • RNA polymerase sigma-70 factor
  • DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
  • DNA-directed RNA polymerase sigma subunit RpoD
  • RNA polymerase sigma factor
  • RNA polymerase sigmA FACTOR 70
• strand^?: +
• coordinates^?: 2777897..2779006
• occurrence^?: in 100% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS05305 (rpoD)
(2)
D39:
SPD_RS05160 (rpoD)
(2)
D39V:
SPV_RS05180 (rpoD)
(19A)
Hungary19A-6:
SPH_RS05635 (rpoD)
(19F)
EF3030:
EF3030_RS05975 (rpoD)
(6B)^?
670-6B:
SP670_RS06240 (rpoD)
(6A)
6A-10:
HKM25_RS05135 (rpoD)
(5)
70585:
SP70585_RS05705 (rpoD)
(19F)
A026:
T308_RS05250 (rpoD)
(3)
A66:
A66_RS04900 (rpoD)
(11A)
AP200:
SPAP_RS05550 (rpoD)
(12F)
ASP0581:
EL334_RS05295 (rpoD)
(19F)
ATCC 49619:
EL263_RS05350 (rpoD)
(23F)
ATCC 700669:
SPN23F_RS05065 (rpoD)
(19F)
BM6001:
ODS73_RS05465 (rpoD)
(1)
BVJ1JL:
JN057_RS05490 (rpoD)
(14)
CGSP14:
SPCG_RS06255 (rpoD)
(19F)
G54:
SPG_RS05005 (rpoD)
(1)
gamPNI0373:
HMPREF1038_RS05460 (rpoD)
(3)
HU-OH:
EL271_RS05135 (rpoD)
(19A)
Hu15:
SPNHU15_RS05180 (rpoD)
(19A)
Hu17:
SPNHU17_RS05105 (rpoD)
(1)
INV104:
INV104_RS05375 (rpoD)
(14)
INV200:
SPNINV200_RS06070 (rpoD)
(14)
JJA:
SPJ_RS05055 (rpoD)
(19F)
MDRSPN001:
MDRSPN_RS04830 (rpoD)
(1)
NCTC7465:
AT689_RS08460 (rpoD)
(2)
NCTC7466:
DQM66_RS05190 (rpoD)
(4)
NU83127:
EL277_RS05405 (rpoD)
(3)
OXC141:
SPNOXC_RS05295 (rpoD)
(1)
P1031:
SPP_RS05340 (rpoD)
(2)
R6:
SPR_RS04905 (rpoD)
(19A)
SP49:
BMJ42_RS05855 (rpoD)
(1)
SPN032672:
SPN032672_RS00250 (rpoD)
(3)
SPN034156:
SPN034156_RS00350 (rpoD)
(3)
SPN034183:
SPN034183_RS05315 (rpoD)
(3)
SPN994038:
SPN994038_RS05220 (rpoD)
(3)
SPN994039:
SPN994039_RS05225 (rpoD)
(3)
SPNA45:
SPNA45_RS07690 (rpoD)
(19F)
ST556:
MYY_RS05730 (rpoD)
(19F)
Taiwan19F-14:
SPT_RS05520 (rpoD)
(19A)
TCH8431/19A:
HMPREF0837_RS06765 (rpoD)
(4)
Xen35:
CXP32_RS05365 (rpoD)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MATKQKEVTTFDVQVAEFIRNHKQKGTATDDEINASLVIPFTLDADGIEDLLQRIQDAGI
  D39             MATKQKEVTTFDVQVAEFIRNHKQKGTATDDEINASLVIPFTLDADGIEDLLQRIQDAGI
  D39V            MATKQKEVTTFDVQVAEFIRNHKQKGTATDDEINASLVIPFTLDADGIEDLLQRIQDAGI
  Hungary19A-6    MATKQKEVTTFDVQVAEFIRNHKQKGTATDDEINASLVIPFTLDADGIEDLLQRIQDAGI
  EF3030          MATKQKEVTTFDVQVAEFIRNHKQKGTATDDEINASLVIPFTLDADGIEDLLQRIQDAGI
                  ************************************************************
  
  TIGR4           SITDNEGNPSARVLSNEEEPELSDEDLIGSTSAKVNDPVRMYLKEIGVVPLLTNEEEKEL
  D39             SITDNEGNPSARVLSNEEEPELSDEDLIGSTSAKVNDPVRMYLKEIGVVPLLTNEEEKEL
  D39V            SITDNEGNPSARVLSNEEEPELSDEDLIGSTSAKVNDPVRMYLKEIGVVPLLTNEEEKEL
  Hungary19A-6    SITDNEGNPSARVLSNEEEPELSDEDLIGSTSAKVNDPVRMYLKEIGVVPLLTNEEEKEL
  EF3030          SITDNEGNPSARVLSNEEEPELSDEDLIGSTSAKVNDPVRMYLKEIGVVPLLTNEEEKEL
                  ************************************************************
  
  TIGR4           ALAVEAGDIEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKG
  D39             ALAVEAGDIEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKG
  D39V            ALAVEAGDIEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKG
  Hungary19A-6    ALAVEAGDIEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKG
  EF3030          ALAVEAGDIEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKG
                  ************************************************************
  
  TIGR4           FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
  D39             FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
  D39V            FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
  Hungary19A-6    FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
  EF3030          FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
                  ************************************************************
  
  TIGR4           ERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQL
  D39             ERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQL
  D39V            ERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQL
  Hungary19A-6    ERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQL
  EF3030          ERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQL
                  ************************************************************
  
  TIGR4           DEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRS
  D39             DEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRS
  D39V            DEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRS
  Hungary19A-6    DEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRS
  EF3030          DEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRS
                  ************************************************************
  
  TIGR4           KPLRDFIED
  D39             KPLRDFIED
  D39V            KPLRDFIED
  Hungary19A-6    KPLRDFIED
  EF3030          KPLRDFIED
                  *********