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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002253000
- symbol?: rggD
- synonym:
- description?: XRE/MutR family transcriptional regulator
- XRE/MutR family transcriptional regulator
- putative DNA-binding protein
- Transcriptional regulator
- MutR family transcriptional regulator
- transcriptional regulator MutR
- Positive transcriptional regulator, MutR family
- putative transcriptional regulator MutR
- Predicted transcriptional regulator
- transcriptional activator, Rgg/GadR/MutR family, C-terminal domain protein
- transcriptional activator, Rgg/GadR/MutR family domain protein
- transcriptional activator MutR, putative
- transcriptional regulator MutR, putative
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2817316..2818179
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MEHLGKVFREFRTSGNYSLKEAAGESCSTSQLSRFELGESDLAVSRFFEILDNIHVTIEN
D39 MEHLGKVFREFRTSGNYSLKEAAGESCSTSQLSRFELGESDLAVSRFFEILDNIHVTIEN
D39V MEHLGKVFREFRTSGNYSLKEAAGESCSTSQLSRFELGESDLAVSRFFEILDNIHVTIEN
Hungary19A-6 MEHLGKVFREFRTSGNYSLKEAAGESCSTSQLSRFELGESDLAVSRFFEILDNIHVTIEN
EF3030 MEHLGKVFREFRTSGNYSLKEAAGESCSTSQLSRFELGESDLAVSRFFEILDNIHVTIEN
************************************************************
TIGR4 FMDKARNFHNHEHVSMMAQIIPLYYSNDIAGFQKLQREQLEKSKSSTTPLYFELNWILLQ
D39 FMDKARNFHNHEHVSMMAQIIPLYYSNDIAGFQKLQREQLEKSKSSTTPLYFELNWILLQ
D39V FMDKARNFHNHEHVSMMAQIIPLYYSNDIAGFQKLQREQLEKSKSSTTPLYFELNWILLQ
Hungary19A-6 FMDKARNFHNHEHVSMMAQIIPLYYSNDIAGFQKLQREQLEKAKSSTTPLYFELNWILLQ
EF3030 FMDKARNFHNHEHVSMMAQIIPLYYSNDIAGFQKLQREQLEKSKSSTTPLYFELNWILLQ
******************************************:*****************
TIGR4 GLICQRDASYDMKQDDLGKVADYLFKTEEWTMYELILFGNLYSFYDVDYVTRIGREVMER
D39 GLICQRDASYDMKQDDLDKVADYLFKTEEWTMYELILFGNLYSFYDVDYVTRIGREVMER
D39V GLICQRDASYDMKQDDLDKVADYLFKTEEWTMYELILFGNLYSFYDVDYVTRIGREVMER
Hungary19A-6 GLICQRDATYDMKQDDLDKVADYLFKTEEWTMYELILFDNLYSFYDVDYITRIGREVMER
EF3030 GLICQRDASYDMKQDDLDKVADYLFKTEEWTMYELILFGNLYSFYDVDYVTRIGREVMER
********:********.********************.**********:**********
TIGR4 EEFYQEISRHKRLVLILALNCYQHCLEHSSFYNANYFEAYTEKIIDKGIKLYERNVFHYL
D39 EEFYQEISRHKRLVLILALNCYQHCLEHSSFYNANYFEAYTEKIIDKGIKLYERNVFHYL
D39V EEFYQEISRHKRLVLILALNCYQHCLEHSSFYNANYFEAYTEKIIDKGIKLYERNVFHYL
Hungary19A-6 EEFYQEIGRHKRLVLILALNCYQHCLDHLSFDNASYFEAYTEKIIGKGIKLYERNAFHYL
EF3030 EEFYQEISRHKRLVLILALNCYQHCLEHSSFYNANYFEAYTEKIIDKGIKLYERNVFHYL
*******.******************:* ** **.**********.*********.****
TIGR4 KGFALYQKGQCKEGCKQMQEAMHIFDVLGLPEQVAYYQEHYEKFVKS
D39 KGFALYQKGQCKEGCKQMQEAMHIFDVLGLPEQVAYYQEHYEKFVKS
D39V KGFALYQKGQCKEGCKQMQEAMHIFDVLGLPEQVAYYQEHYEKFVKS
Hungary19A-6 KGFALYQKGQCKEGCKQMQEAMHIFDVLGLPEQVAYYQEHYEKFVKS
EF3030 KGFALYQKGQCKEGCKQMQEAMHIFDVLGLPEQVAYYQEHYEKFVKS
***********************************************