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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002378000
- symbol?: clcA
- synonym:
- description?: ClC family H(+)/Cl(-) exchange transporter
- ClC family H(+)/Cl(-) exchange transporter
- voltage-gated chloride channel family protein
- H(+)/Cl(-) exchange transporter ClcA
- ribonuclease HII
- chloride channel protein
- Chloride channel protein EriC
- chloride transporter, ClC family
- Conserved hypothetical protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3034252..3035802
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MEEQSEIVRSKKEFAFASSTILSQVGRGIIVGLIVGIIVGSFRFLIEKGFHLIQGVYQDQ
D39 MEEQSEIVRSKKEFAFASSTILSQVGRGIIVGLIVGIIVGSFRFLIEKGFHLIQGVYQDQ
D39V MEEQSEIVRSKKEFAFASSTILSQVGRGIIVGLIVGIIVGSFRFLIEKGFHLIQGVYQDQ
Hungary19A-6 MEEQSEIVRSKKEFAFASSTILSQVGRGIIVGLIVGIIVGSFRFLIEKGFHLIQGVYQDQ
EF3030 MEEQSEIVRSKKEFAFASSTILSQVGRGIIVGLIVGIIVGSFRFLIEKGFHLIQGVYQDQ
************************************************************
TIGR4 GYLVRNLFVLVLFYILICWLSAKLTRSEKDIKGSGIPQVEAELKGLMSLNWWGILWKKYV
D39 GYLVRNLFVLVLFYILICWLSAKLTRSEKDIKGSGIPQVEAELKGLMSLNWWGILWKKYV
D39V GYLVRNLFVLVLFYILICWLSAKLTRSEKDIKGSGIPQVEAELKGLMSLNWWGILWKKYV
Hungary19A-6 GYLVRNLFVLVLFYILICWLSAKLTRSEKDIKGSGIPQVEAELKGLMSLNWWGILWKKYV
EF3030 GYLVRNLFVLVLFYILICWLSAKLTRSEKDIKGSGIPQVEAELKGLMSLNWWGILWKKYV
************************************************************
TIGR4 LGILAIASGLMLGREGPSIQLGAVGGKGIAKWLKSSPVEERSLIASGAAAGLAAAFNAPI
D39 LGILAIASGLMLGREGPSIQLGAVGGKGIAKWLKSSPVEERSLIASGAAAGLAAAFNAPI
D39V LGILAIASGLMLGREGPSIQLGAVGGKGIAKWLKSSPVEERSLIASGAAAGLAAAFNAPI
Hungary19A-6 LGILAIASGLMLGREGPSIQLGAVGGKGIAKWLKSSPVEERSLIASGAAAGLAAAFNAPI
EF3030 LGILAIASGLMLGREGPSIQLGAVGGKGIAKWLKSSPVEERSLIASGAAAGLAAAFNAPI
************************************************************
TIGR4 AALLFVVEEVYHHFSRFFWVSTLAASIVANFVSLLMFGLTPVLDMPDNIPPMTLDQYWIY
D39 AALLFVVEEVYHHFSRFFWVSTLAASIVANFVSLLMFGLTPVLDMPDNIPPMTLDQYWIY
D39V AALLFVVEEVYHHFSRFFWVSTLAASIVANFVSLLMFGLTPVLDMPDNIPPMTLDQYWIY
Hungary19A-6 AALLFVVEEVYHHFSRFFWVSTLAASIVANFVSLLMFGLTPVLDMPDNIPPMTLDQYWIY
EF3030 AALLFVVEEVYHHFSRFFWVSTLAASIVANFVSLLMFGLTPVLDMPDNIPPMTLDQYWIY
************************************************************
TIGR4 LVMGIFLGFSGFLYEKAVLNVGRVYDLIGQKIHLDRAYYPILAFILIIPVGIFLPQIIGG
D39 LVMGIFLGFSGFLYEKAVLNVGRVYDLIGQKIHLDRAYYPILAFILIIPVGIFLPQIIGG
D39V LVMGIFLGFSGFLYEKAVLNVGRVYDLIGQKIHLDRAYYPILAFILIIPVGIFLPQIIGG
Hungary19A-6 LVMGIFLGFLGFLYEKAVLNVGRVYDLIGQKIHLDRAYYPILAFILIIPVGIFLPQIIGG
EF3030 LVMGIFLGFSGFLYEKAVLNVGRVYDLIGQKIHLDRAYYPILAFILIIPVGIFLPQILGG
********* ***********************************************:**
TIGR4 GNQLVLSLTEQNFSFQVLLAYFLIRFIWSMISYGSGLPGGIFLPILALGSLLGALVGVIC
D39 GNQLVLSLTEQNFSFQVLLAYFLIRFIWSMISYGSGLPGGIFLPILALGSLLGALVGVIC
D39V GNQLVLSLTEQNFSFQVLLAYFLIRFIWSMISYGSGLPGGIFLPILALGSLLGALVGVIC
Hungary19A-6 GNQLVLSLTEQNFSFQVLLAYFLIRFIWSMISYGSGLPGGIFLPILALGSLLGALVGVIC
EF3030 GNQLVLSLTEQNFSFQVLLAYFLIRFIWSMISYGSGLPGGIFLPILALGSLLGALVGVIC
************************************************************
TIGR4 VNLGLVSQEQFPIFVILGMSGYFGAISKAPLTAMILVTEMVGDIRNLMPLGLVTLVSYII
D39 VNLGLVSQEQFPIFVILGMSGYFGAISKAPLTAMILVTEMVGDIRNLMPLGLVTLVSYII
D39V VNLGLVSQEQFPIFVILGMSGYFGAISKAPLTAMILVTEMVGDIRNLMPLGLVTLVSYII
Hungary19A-6 VNLGLVSQEQFPIFVILGMSGYFGAISKAPLTAMILVTEMVGDIRNLMPLGLVTLVSYII
EF3030 VNLGLVSQEQFPIFVILGMSGYFGAISKAPLTAMILVTEMVGDIRNLMPLGLVTLVSYII
************************************************************
TIGR4 MDLLKGTPVYEAMLEKMLPEEVSSEGEVTLIEIPVSDKIAGKQVHELNLPHNVLITTQVH
D39 MDLLKGTPVYEAMLEKMLPEEVSSEGEVTLIEIPVSDKIAGKQVHELNLPHNVLITTQVH
D39V MDLLKGTPVYEAMLEKMLPEEVSSEGEVTLIEIPVSDKIAGKQVHELNLPHNVLITTQVH
Hungary19A-6 MDLLKGTPVYEAMLEKMLPEEVSSEGEVTLIEIPVSDKIAGKQVHELNLPHNVLITTQVH
EF3030 MDLLKGTPVYEAMLEKMLPEEVSSEGEVTLIEIPVSDKIAGKQVHELNLPHNVLITTQVH
************************************************************
TIGR4 NGKSQTVNGSTRMYLGDMIHLVIPKSEIGKVKDLLL
D39 NGKSQTVNGSTRMYLGDMIHLVIPKSEIGKVKDLLL
D39V NGKSQTVNGSTRMYLGDMIHLVIPKSEIGKVKDLLL
Hungary19A-6 NGKSQTVNGSTRMYLGDMIHLVIPKSEIGKVKDLLL
EF3030 NGKSQTVNGSTRMYLGDMIHLVIPKSEIGKVKDLLL
************************************