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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002495000
- symbol?: ybjI
- synonym:
- description?: Cof-type HAD-IIB family hydrolase
- Cof-type HAD-IIB family hydrolase
- Cof family protein
- putative haloacid dehalogenase-like hydrolase
- haloacid dehalogenase
- 5-amino-6-(5-phospho-D-ribitylamino)uracil
- 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YbjI
- Cof-like hydrolase
- Conserved hypothetical protein
- HAD hydrolase, IIB family protein
- HMP-PP hydrolase (pyridoxal phosphatase) Cof,detected in genetic screen for thiamin metabolic genes (PMID:15292217)
- Hydrolase (HAD superfamily)
- Hydrolase, HAD superfamily
- Predicted hydrolases of the HAD superfamily
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3192849..3193644
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MTIKLVATDMDGTFLDGNGRFDMDRLKSLLVSYKEKGIYFAVASGRGFLSLEKLFAGVRD
D39 MTIKLVATDMDGTFLDGNGRFDMDRLKSLLASYKEKGIYFAVASGRGFLSLEKLFADVRD
D39V MTIKLVATDMDGTFLDGNGRFDMDRLKSLLASYKEKGIYFAVASGRGFLSLEKLFADVRD
Hungary19A-6 MTIKLVATDMDGTFLDGNGRFDMDRLKSLLASYKEKGIYFAVASGRGFLSLEKLFADVRD
EF3030 MTIKLVATDMDGTFLDGNGRFDMDRLKSLLASYKEKGIYFAVASGRGFLSLEKLFADVRD
******************************.*************************.***
TIGR4 DIIFIAENGSLVEYQGQDLYEATMSRDFYLATFEKLKTSPYVDINKLLLTGKKGSYVLDT
D39 DIIFIAENGSLVEYQGQDLYEATMSRDFYLATFEKLKTSPYVDINKLLLTGKKGSYVLDT
D39V DIIFIAENGSLVEYQGQDLYEATMSRDFYLATFEKLKTSPYVDINKLLLTGKKGSYVLDT
Hungary19A-6 DIIFIAENGSLVEYQGQDLYEVTMSRDFYLATFEKLKTSPYVDINKLLLTGKKGSYVLDT
EF3030 DIIFIAENGSLVEYQGQDLYEATMSRDFYLATFEKLKTSPYVDINKLLLTGKKGSYVLDT
*********************.**************************************
TIGR4 VDETYLKVSQHYNENIQKVASLEDITDDIFKFTTNFTEETLEDGEAWVNENVPGVKAMTT
D39 VDETYLKVSQHYNENIQKVASLEDITDDIFKFTTNFTEETLEAGEAWVNEHVPGVKAMTT
D39V VDETYLKVSQHYNENIQKVASLEDITDDIFKFTTNFTEETLEAGEAWVNEHVPGVKAMTT
Hungary19A-6 VDETYLKVSQHYNENIQKVASLEDITDDIFKFTTNFTEETLEDGEAWVNENVPGVKAMTT
EF3030 VDETYLKVSQHYNENIQKVASLEDITDDIFKFTTNFTEETLEAGEAWVNDNVPGVKAMTT
****************************************** ******::*********
TIGR4 GFESIDIVLDYVDKGVAIVELVKKLGITMDQVMAFGDNLNDLHMMQVVGHPVAPENARPE
D39 GFESIDIVLDYVDKGVAIVELAKKLGITMDQVMAFGDNLNDLHMMQVVGHPVAPENARPE
D39V GFESIDIVLDYVDKGVAIVELAKKLGITMDQVMAFGDNLNDLHMMQVVGHPVAPENARPE
Hungary19A-6 GFESIDIVLDYVDKGVAIVELVKKLGITMDQVMAFGDNLNDLHMMQVVGHPVAPENARPE
EF3030 GFESIDIVLDYVDKGVAIVELAKKLGITMDQVMAFGDNLNDLHMMQVVGHPVAPENARPE
*********************.**************************************
TIGR4 ILELAKTVIGHHKERSVIAYMEGL
D39 ILELAKTVIGHHKERSVIAYMEGL
D39V ILELAKTVIGHHKERSVIAYMEGL
Hungary19A-6 ILELAKTVIGHHKDQSVIAYMEGL
EF3030 ILELAKTVIGHHKDQSVIAYMEGL
*************::*********