Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002554000
- symbol?: licB
- synonym:
- description?: DMT family transporter
- DMT family transporter
- putative LicB-family membrane protein
- Homologous to LicB, which regulates expression of LPS epitopes in H. influenzae
- licB protein
- Choline permease LicB
- drug/metabolite transporter (DMT) superfamily permease
- LicB-like protein
- EamA/RhaT family transporter
- LicB homlike proteinolog
- LicB homolog
- lipopolysaccharide core protein B
- membrane protein
- multidrug resistance efflux transporter family protein
- Permeases of the drug/metabolite transporter (DMT) superfamily
- protein LicB
- putative membrane protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3172127..3173005
- occurrence?: in 100% of 41 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKSKNGVPFGLLSGIFWGLGLTVSAYIFSIFTDLSPFVVAATHDFLSIFILLAFLLVKEG
D39 MKSKNGVPFGLLSGIFWGLGLTVSAYIFSIFTDLSPFVVAATHDFLSIFILLAFLLVKEG
D39V MKSKNGVPFGLLSGIFWGLGLTVSAYIFSIFTDLSPFVVAATHDFLSIFILLAFLLVKEG
Hungary19A-6 MKSKNGVPFGLLSGIFWGLGLTVSAYIFSIFTDLSPFVVAAAHDFLSIFILLAFLLVKEG
EF3030 MKSKNGVPFGLLSGIFWGLGLTVSAYIFSIFTDLSPFVVAAAHDFLSIFILLAFLLVKEG
*****************************************:******************
TIGR4 KVRLSIFLNIRNVSVIIGALLAGPIGMQANLYAVKYIGSSLASSVSAIYPAISVLLAFFF
D39 KVRLSIFLNIRNVSVIIGALLAGPIGMQANLYAVKYIGSSLASSVSAIYPAISVLLAFFF
D39V KVRLSIFLNIRNVSVIIGALLAGPIGMQANLYAVKYIGSSLASSVSAIYPAISVLLAFFF
Hungary19A-6 KVRLSIFLNIRNVSVIIGALLAGPIGMQANLYAVKYIGSSLASSVSAIYPAISVLLAFFF
EF3030 KVRLSIFLNIRNVSVIIGALLAGPIGMQANLYAVKYIGSSLASSVSAIYPAISVLLAFFF
************************************************************
TIGR4 LKHKISKNTVFGIVLIIGGIIAQTYKVEQVNSFYIGILCALVCAIAWGSESVLSSFAMES
D39 LKHKISKNTVFGIVLIIGGIIAQTYKVEQVNSFYIGILCALVCAIAWGSESVLSSFAMES
D39V LKHKISKNTVFGIVLIIGGIIAQTYKVEQVNSFYIGILCALVCAIAWGSESVLSSFAMES
Hungary19A-6 LKHKISKNTVFGIVLIIGGIIAQTYKVEQVNSFYIGILCALVCAIAWGSESVLSSFAMES
EF3030 LKHKISKNTVFGIVLIIGGIIAQTYKVEQVNSFYIGILCALVCAIAWGSESVLSSFAMES
************************************************************
TIGR4 ELSEIEALLIRQVTSFLSYLVIVLFSHQSFTAVANGQLLGLMIVFAAFDMISYLAYYIAI
D39 ELSEIEALLIRQVTSFLSYLVIVLFSHQSFTAVANGQLLGLMIVFAAFDMISYLAYYIAI
D39V ELSEIEALLIRQVTSFLSYLVIVLFSHQSFTAVANGQLLGLMIVFAAFDMISYLAYYIAI
Hungary19A-6 ELSEIEALLIRQVTSFLSYLVIVLFSHQSFTAVANGQLLGLMIVFAAFDMISYLAYYIAI
EF3030 ELSEIEALLIRQVTSFLSYLVIVLFSHQSFTAVANGQLLGLMIVFAAFDMISYLAYYIAI
************************************************************
TIGR4 NRLQPAKATGLNVSYVVWTVLFAVVFLGAPLDMLTIMTSLVVIAGVYIIIKE
D39 NRLQPAKATGLNVSYVVWTVLFAVVFLGAPLDMLTIMTSLVVIAGVYIIIKE
D39V NRLQPAKATGLNVSYVVWTVLFAVVFLGAPLDMLTIMTSLVVIAGVYIIIKE
Hungary19A-6 NRLQPAKATGLNVSYVVWTVLFAVVFLGAPLDMLTIMTSLVVIAGVYIIIKE
EF3030 NRLQPAKATGLNVSYVVWTVLFAVVFLGAPLDMLTIMTSLVVIAGVYIIIKE
****************************************************