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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002640000
- symbol?: tarP
- synonym:
- description?: O-antigen polysaccharide polymerase Wzy family protein
- O-antigen polysaccharide polymerase Wzy family protein
- putative membrane protein
- membrane protein, putative
- membrane protein
- Uncharacterised protein
- conserved hypothetical membrane protein
- conserved hypothetical protein
- O-antigen polysaccharide polymerase Wzy
- oligosaccharide repeat unit polymerase
- Putative uncharacterized protein in cluster with two glycosyl transferases
- Teichoic acid ribitol polymerase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3495608..3497041
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MIDGKRLLFSLTIVSYALTLVSGIVYLFNNNNVSLLSTLLFLLVSSLIACWNDIKYYLIH
D39 MIDGKRLLFSLTIVSYALTLVSGIVYLFNNNNVSLLSTLLFLLVSSLIACWNDIKYYLIH
D39V MIDGKRLLFSLTIVSYALTLVSGIVYLFNNNNVSLLSTLLFLLVSSLIACWNDIKYYLIH
Hungary19A-6 MIDGKRLLFSLTIVSYALTLVSGIVYLFNNNNVSLLSTLLFLLVSSLIACWNDIKYYLIH
EF3030 MIDGKRLLFSLTIVSYALTLVSGIVYLFNNNNVSLLSTLLFLLVSSLIACWNDIKYYLIH
************************************************************
TIGR4 FIFYLTIFVFLVSRPTIDYFRDGALDTYHPIAYRFAFIVVMISILGLTTGGILARYFIAR
D39 FIFYLTIFVFLVSRPTIDYFRDGALDTYHPIAYRFAFIVVMVSILGLTTGGVLARYFIAR
D39V FIFYLTIFVFLVSRPTIDYFRDGALDTYHPIAYRFAFIVVMVSILGLTTGGVLARYFIAR
Hungary19A-6 FIFYLTIFVFLVSRPTIDYFRDGALDTYHPIAYRFAFIVVMVSILGLTTGGILARYFIAR
EF3030 FIFYLTIFVFLVSRPTIDYFRDGALDTYHPIAYRFAFIVVMISILGLTTGGILARYFIAR
*****************************************:*********:********
TIGR4 KKIKVANIGNSLKEVYIKRLRFVSLGVFLLTYPFYFIRLFERLLYRLQTSYYAYYANFES
D39 KKIKVANIGNSLKEVYIKRLRFVSLGVFLLTYPFYFIRLFERLLYRLQTSYYAYYANFES
D39V KKIKVANIGNSLKEVYIKRLRFVSLGVFLLTYPFYFIRLFERLLYRLQTSYYAYYANFES
Hungary19A-6 KKIKVANIGNSLKEVYIKRLRFVSLGVFLLTYPFYFIRLFERLLYRLQTSYYAYYANFES
EF3030 KKIKVANIGNSLKEVYIKRLRFVSLGVFLLTYPFYFIRLFERLLYRLQTSYYAYYANFES
************************************************************
TIGR4 KLPYFTYILSTFTVYAMCMYLATKPKKLQATAVLVSFIAANTIHLAIGTRNPFILSILFA
D39 KLPYFTYILSTFTVYAMCMYLATKPKKLQATAVLVSFIAANTIHLAIGTRNPFILSILFA
D39V KLPYFTYILSTFTVYAMCMYLATKPKKLQATAVLVSFIAANTIHLAIGTRNPFILSILFA
Hungary19A-6 KLPYFTYILSTFTVYAMCMYLATKPKKLQATAVLVSFIAANTIHLAIGTRNPFILSILFA
EF3030 KLPYFTYILSTFTVYAMCMYLATKPKKLQATAVLVSFIAANTIHLAIGTRNPFILSILFA
************************************************************
TIGR4 FVYYFMREQTEKGKWIGFKEKLAIFVGSPILMLAMGVLNYVRDNVQVSHTGFWDILLDFI
D39 FVYYFMREQAEKGKWIGFKEKLAIFVGSPILMLAMGVLNYVRDNVQVSHTGFWDILLDFI
D39V FVYYFMREQAEKGKWIGFKEKLAIFVGSPILMLAMGVLNYVRDNVQVSHTGFWDILLDFI
Hungary19A-6 FVYYFMREQTEKGKWIGFKEKLAIFVGSPILMLAMGVLNYVRDNVQVSHTGFWDILLDFI
EF3030 FVYYFMREQTEKGKWIGFKEKLAIFVGSPILMLAMGVLNYVRDNVQVSHTGFWDILLDFI
*********:**************************************************
TIGR4 YKQGTSFGVLARGFLFNSSLPYRDFRNFTFGPVLDYFARGSLGAIFGGKAFEHTTNSVEL
D39 YKQGTSFGVLARGFLFNSSLPYRDFRNFTFGPVLDYFARGSLGAIFGGKAFEHTTNSVEL
D39V YKQGTSFGVLARGFLFNSSLPYRDFRNFTFGPVLDYFARGSLGAIFGGKAFEHTTNSVEL
Hungary19A-6 YKQGTSFGVLARGFLFNSSLPYRDFRNFTFGPVLDYFARGSLGAIFGGKAFEHTTNSVEL
EF3030 YKQGTSFGVLARGFLFNSSLPYRDFRNFTFGPVLDYFARGSLGAIFGGKAFEHTTNSVEL
************************************************************
TIGR4 AIDSNSYAHNLSYLVLNKEYLKGHGIGSSYIMELYTDYGMIGVFLLSFLLGVLFIAMLQV
D39 AIDSNSYAHNLSYLVLNKEYLKGHGIGSSYIMELYTDYGMIGVFLLSFLLGVLFIAMLQV
D39V AIDSNSYAHNLSYLVLNKEYLKGHGIGSSYIMELYTDYGMIGVFLLSFLLGVLFIAMLQV
Hungary19A-6 AIDSNSYAHNLSYLVLNKEYLKGHGIGSSYIMELYTDYGMIGVFLLSFLLGVLFIAMLQV
EF3030 AIDSNSYAHNLSYLVLNKEYLKGHGIGSSYIMELYTDYGMIGVFLLSFLLGVLFIAMLQV
************************************************************
TIGR4 AYRSRTILFALSLLILNNLFFMPRSSFSESFFNLFTMQFWGIVLVIIFVAKMLTKEN
D39 AYRSRTILFALSLLILNNLFFMPRSSFSESFFNLFTMQFWGIVLVIIFVAKMLTKEN
D39V AYRSRTILFALSLLILNNLFFMPRSSFSESFFNLFTMQFWGIVLVIIFVAKMLTKEN
Hungary19A-6 AYRSRTILFALSLLILNNLFFMPRSSFSESFFNLFTMQFWGIVLVIIFVAKMLTKEN
EF3030 AYRSRTILFALSLLILNNLFFMPRSSFSESFFNLFTMQFWGIVLVIIFVAKMLTKEN
*********************************************************