Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002644000
- symbol?: psr
- synonym:
- description?: polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase Psr
- polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase Psr
- cell envelope-related transcriptional attenuator domain protein
- transcriptional regulator, LytR family
- LytR family transcriptional regulator
- psr protein
- Regulatory protein MsrR
- Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F1 (as in PMID19099556)
- cell envelope-like function transcriptional attenuator common domain protein
- cell envelope-related function transcriptional attenuator common domain protein
- Conserved hypothetical protein
- LytR-CpsA-Psr subfamily F1 cell envelope-associated transcriptional attenuator
- Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagU
- putative transcriptional attenuator
- Transcriptional regulator
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3500266..3501540
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
(12F)
ASP0581:
EL334_RS06995 (psr)
(19F)
ATCC 49619:
EL263_RS06655 (psr)
(23F)
ATCC 700669:
SPN23F_RS06745 (psr)
(19A)
SP49:
BMJ42_RS07110 (psr)
(1)
SPN032672:
SPN032672_RS01565 (psr)
(3)
SPN034156:
SPN034156_RS01525 (psr)
(3)
SPN034183:
SPN034183_RS06485 (psr)
(3)
SPN994038:
SPN994038_RS06390 (psr)
(3)
SPN994039:
SPN994039_RS06395 (psr)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MSKENPLSHHEQLRYDYLLKNIHYLNEREKNEFAYLQEKLTLARGNSSSSLEQEREEQVD
D39 MSKENPLSHHEQLRYDYLLKNIHYLNEREKNEFAYLQEKLTLARGNSSSSLEQEREEQVD
D39V MSKENPLSHHEQLRYDYLLKNIHYLNEREKNEFAYLQEKLTLARGNSSSSLEQEREEQVD
Hungary19A-6 MSKENPLSHHEQLRYDYLLKNIHYLNEREKNEFAYLQEKLTLARGNSSSSLEQEREEQVD
EF3030 MSKENPLSHHEQLRYDYLLKNIHYLNEREKNEFAYLQEKLTLARGNSSSSLEQEREEQVD
************************************************************
TIGR4 LPSYANRSRSQSKSQALSFPPKKKRRKLRLKRIFMVIFSLLVCVALAMVFMFLRGYQDAS
D39 LPSYANRSRSQSKSQALSFPPKKKRRKLRLKRIFMVIFSLLVCVALAMVFMFLRGYQDAS
D39V LPSYANRSRSQSKSQALSFPPKKKRRKLRLKRIFMVIFSLLVCVALAMVFMFLRGYQDAS
Hungary19A-6 LPSYANRSRSQSKSQALSSPPKKKRRKLRLKRIFMVIFSLLVCVALAMVFMFLRGYQDAS
EF3030 LPSYANRSRSQSKSQALSFPPKKKRRKLRLKRIFMVIFSLLVCVALAMVFMFLRGYQDAS
****************** *****************************************
TIGR4 AKKTADARAAQVEVFNGQDTRDGVNILIMGTDGRIGQNSVETRTDSIMVLNVGGSDKKMK
D39 AKKTADARAAQVEVFNGQDTRDGVNILIMGTDGRIGQNSVETRTDSIMVLNVGGSDKKMK
D39V AKKTADARAAQVEVFNGQDTRDGVNILIMGTDGRIGQNSVETRTDSIMVLNVGGSDKKMK
Hungary19A-6 AKKTADARAAQVEVFNGQDTRDGVNILIMGTDGRIGQNSVETRTDSIMVLNVGGSDKKMK
EF3030 AKKTADARAAQVEVFNGQDTRDGVNILIMGTDGRIGQNSVETRTDSIMVLNVGGSDKKMK
************************************************************
TIGR4 LVSFMRDNLVYIDGYSQVINGRKQTDNKLNVAYELGEQEGQKGAEMVRQVLKDNFDLDIK
D39 LVSFMRDNLVYIDGYSQVINGRKQTDNKLNVAYELGEQEGQKGAEMVRQVLKDNFDLDIK
D39V LVSFMRDNLVYIDGYSQVINGRKQTDNKLNVAYELGEQEGQKGAEMVRQVLKDNFDLDIK
Hungary19A-6 LVSFMRDNLVYIDGYSQVINGRKQTDNKLNVAYELGEQEGQKGAEMVRQVLKDNFDLDIK
EF3030 LVSFMRDNLVYIDGYSQVINGRKQTDNKLNVAYELGEQEGQKGAEMVRQVLKDNFDLDIK
************************************************************
TIGR4 YYALVDFQAFATAIDTLFPDGVTIDAQFSTLNGRPLTEATVGDDLYATETESPTQTIKVG
D39 YYALVDFQAFATAIDTLFPDGVTIDAQFSTLNGRPLTEATVGDDLYATETESPTQTIKVG
D39V YYALVDFQAFATAIDTLFPDGVTIDAQFSTLNGRPLTEATVGDDLYATETESPTQTIKVG
Hungary19A-6 YYALVDFQAFATAIDTLFPDGVTIDAQFSTLNGRPLTEATVGDDLYATETESPTQTIKVG
EF3030 YYALVDFQAFATAIDTLFPDGVTIDAQFSTLNGRPLTEATVGDDLYATETESPTQTIKVG
************************************************************
TIGR4 KQQMNGSTLLNYARFRDDDEADYGRTKRQQQVLTAILEQIKDPTKLFTGSEALGKVFAMT
D39 KQQMNGSTLLNYARFRDDDEADYGRTKRQQQVLTAILEQIKDPTKLFTGSEALGKVFAMT
D39V KQQMNGSTLLNYARFRDDDEADYGRTKRQQQVLTAILEQIKDPTKLFTGSEALGKVFAMT
Hungary19A-6 KQQMNGSTLLNYARFRDDDEADYGRTKRQQQVLTAILEQIKDPTKLFTGSEALGKVFAMT
EF3030 KQQMNGSTLLNYARFRDDDEADYGRTKRQQQVLTAILEQIKDPTKLFTGSEALGKVFAMT
************************************************************
TIGR4 STNVPYTFLLTNGLSVLDGAKNGIEKLTIPELGDWVDAYDVYGGLGLLVDQNKYQTKLAQ
D39 STNVPYTFLLTNGLSVLDGAKNGIEKLTIPELGDWVDAYDVYGGLGLLVDQNKYQTKLAQ
D39V STNVPYTFLLTNGLSVLDGAKNGIEKLTIPELGDWVDAYDVYGGLGLLVDQNKYQTKLAQ
Hungary19A-6 STNVPYTFLLTNGLSVLDGAKNGIEKLTIPELGDWVDAYDVYGGLGLLVDQNKYQTKLAQ
EF3030 STNVPYTFLLTNGLSVLDGAKNGIEKLTIPELGDWVDAYDVYGGLGLLVDQNKYQTKLAQ
************************************************************
TIGR4 MGLR
D39 MGLR
D39V MGLR
Hungary19A-6 MGLR
EF3030 MGLR
****