PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN002662000
• symbol^?: potD
• synonym:
• description^?: ABC transporter substrate-binding protein

  descriptions from strain specific annotations:

  • ABC transporter substrate-binding protein
  • spermidine/putrescine extracellular binding protein
  • spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein
  • ABC transporter substrate-binding protein - spermidine/putrescine transport
  • spermidine/putrescine ABC transporter substrate-binding protein
  • Spermidine/putrescine-binding periplasmic
  • ABC transporter, spermidine/putrescine-binding protein
  • Spermidine/putrescine-binding periplasmic protein
  • ABC transporter%2C spermidine/putrescine-binding protein
  • ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)
  • ABC transporter, solute-binding protein
  • bacterial extracellular solute-binding family protein
  • spermidine/putrescine ABC transporter spermidine/putrescine-binding protein
  • Spermidine/putrescine import ABC transporter substrate-binding protein PotD
  • pseudogene
• strand^?: -
• coordinates^?: 3520251..3521383
• occurrence^?: in 100% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS06795
(2)
D39:
SPD_RS06515
(2)
D39V:
SPV_RS06510
(19A)
Hungary19A-6:
SPH_RS07335
(19F)
EF3030:
EF3030_RS06465
(6B)^?
670-6B:
SP670_RS04500
(6A)
6A-10:
HKM25_RS06435
(5)
70585:
SP70585_RS07060
(19F)
A026:
T308_RS04145
(3)
A66:
A66_RS06115
(11A)
AP200:
SPAP_RS06975
(12F)
ASP0581:
EL334_RS07085
(19F)
ATCC 49619:
EL263_RS06745
(23F)
ATCC 700669:
SPN23F_RS06830
(19F)
BM6001:
ODS73_RS07100
(1)
BVJ1JL:
JN057_RS06795
(14)
CGSP14:
SPCG_RS07115
(19F)
G54:
SPG_RS06625
(1)
gamPNI0373:
HMPREF1038_RS06715
(3)
HU-OH:
EL271_RS06800
(19A)
Hu15:
SPNHU15_RS06785
(19A)
Hu17:
SPNHU17_RS06710
(1)
INV104:
INV104_RS06770
(14)
INV200:
SPNINV200_RS06570
(14)
JJA:
SPJ_RS06385
(19F)
MDRSPN001:
MDRSPN_RS03730
(1)
NCTC7465:
AT689_RS07125
(2)
NCTC7466:
DQM66_RS06515
(4)
NU83127:
EL277_RS06855
(3)
OXC141:
SPNOXC_RS06555
(1)
P1031:
SPP_RS06925
(2)
R6:
SPR_RS06215
(19A)
SP49:
BMJ42_RS07200
(1)
SPN032672:
SPN032672_RS01650
(3)
SPN034156:
SPN034156_RS01610
(3)
SPN034183:
SPN034183_RS06570
(3)
SPN994038:
SPN994038_RS06475
(3)
SPN994039:
SPN994039_RS06480
(3)
SPNA45:
SPNA45_RS04665
(19F)
ST556:
MYY_RS04620
(19F)
Taiwan19F-14:
SPT_RS04405
(19A)
TCH8431/19A:
HMPREF0837_RS05570
(4)
Xen35:
CXP32_RS06865

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MKKIYSFLAGIAAIILVLWGIATHLDSKINSRDSQKLVIYNWGDYIDPELLTQFTEETGI
  D39             MKKIYSFLAGIAAIILVLWGIATHLDSKINSRDSQKLVIYNWGDYIDPELLTQFTEETGI
  D39V            MKKIYSFLAGIAAIILVLWGIATHLDSKINSRDSQKLVIYNWGDYIDPELLTQFTEETGI
  Hungary19A-6    MKKIYSFLAGIAAIILVLWGIATHLDSKINSRDSQKLVIYNWGDYIDPELLTQFTEETGI
  EF3030          MKKIYSFLAGIAAIILVLWGIATHLDSKINSRDSQKLVIYNWGDYIDPELLTQFTEETGI
                  ************************************************************
  
  TIGR4           QVQYETFDSNEAMYTKIKQGGTTYDIAIPSEYMINKMKDEDLLVPLDYSKIEGIENIGPE
  D39             QVQYEAFDSNEAMYTKIKQGGTTYDIAIPSEYMINKMKDEDLLVPLDYSKIEGIENIGPE
  D39V            QVQYEAFDSNEAMYTKIKQGGTTYDIAIPSEYMINKMKDEDLLVPLDYSKIEGIENIGPE
  Hungary19A-6    QVQYETFDSNEAMYTKIKQGGTTYDIAIPSEYMINKMKDEDLLVPLDYSKIEGIENIGPE
  EF3030          QVQYETFDSNEAMYTKIKQGGTTYDIAIPSEYMINKMKDEDLLVPLDYSKIEGIENIGPE
                  *****:******************************************************
  
  TIGR4           FLNQSFDPGNKFSIPYFWGTLGIVYNETMVDEAPEHWDDLWKPEYKNSIMLFDGAREVLG
  D39             FLNQSFDPGNKFSIPYFWGTLGIVYNETMVDEAPEHWDDLWKLEYKNSIMLFDGAREVLG
  D39V            FLNQSFDPGNKFSIPYFWGTLGIVYNETMVDEAPEHWDDLWKLEYKNSIMLFDGAREVLG
  Hungary19A-6    FLNQSFDPGNKFSIPYFWGTLGIVYNETMVDEAPEHWDDLWKPEYKNSIMLFDGAREVLG
  EF3030          FLNQSFDPGNKFSIPYFWGTLGIVYNETMVDEAPEHWDDLWKPEYKNSIMLFDGAREVLG
                  ****************************************** *****************
  
  TIGR4           LGLNSLGYSLNSKDLQQLEETVDKLYKLTPNIKAIVADEMKGYMIQNNVAIGVTFSGEAS
  D39             LGLNSLGYSLNSKDPQQLEETVDKLYKLTPNIKAIVADEMKGYMIQNNVAIGVTFSGEAS
  D39V            LGLNSLGYSLNSKDPQQLEETVDKLYKLTPNIKAIVADEMKGYMIQNNVAIGVTFSGEAS
  Hungary19A-6    LGLNSLGYSLNSKDPQQLEETVDKLYKLTPNIKAIVADEMKGYMIQNNVAIGVTFSGEAS
  EF3030          LGLNSLGYSLNSKDLQQLEETVDKLYKLTPNIKAIVADEMKGYMIQNNVAIGVTFSGEAS
                  ************** *********************************************
  
  TIGR4           QMLEKNENLRYVVPTEASNLWFDNMVIPKTVKNQNSAYAFINFMLKPENALQNAEYVGYS
  D39             QMLEKNENLRYVVPTEASNLWFDNMVIPKTVKNQDSAYAFINFMLKPENALQNAEYVGYS
  D39V            QMLEKNENLRYVVPTEASNLWFDNMVIPKTVKNQDSAYAFINFMLKPENALQNAEYVGYS
  Hungary19A-6    QMLEKNENLRYVVPTEASNLWFDNMVIPKTVKNQDSAYAFINFMLKPENALQNAEYVGYS
  EF3030          QMLEKNENLRYVVPTEASNLWFDNMVIPKTVKNQNSAYAFINFMLKPENALQNAEYVGYS
                  **********************************:*************************
  
  TIGR4           TPNLPAKELLPEETKEDKAFYPDVETMKHLEVYEKFDHKWTGKYSDLFLQFKMYRK
  D39             TPNLPAKELLPEETKEDKAFYPDVETMKHLEVYEKFDHKWTGKYSDLFLQFKMYRK
  D39V            TPNLPAKELLPEETKEDKAFYPDVETMKHLEVYEKFDHKWTGKYSDLFLQFKMYRK
  Hungary19A-6    TPNLPAKELLPEETKEDKAFYPDVETMKHLEVYEKFDHKWTGKYSDLFLQFKMYRK
  EF3030          TPNLPAKELLPEETKEDKAFYPDVETMKHLEVYEKFDHKWTGKYSDLFLQFKMYRK
                  ********************************************************