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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002740000
- symbol?: trmH
- synonym: rlmB
- description?: 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
- 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
- RNA methyltransferase, TrmH family, group 3
- spoU rRNA methylase family protein
- TrmH family RNA methyltransferase group 3
- Putative TrmH family tRNA/rRNA
- 23S rRNA (guanosine(2251)-2'-O)-methyltransferase
- 23S rRNA (guanosine-2'-O-)-methyltransferase
- 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB
- Putative TrmH family tRNA/rRNA methyltransferase
- RNA 2'-O ribose methyltransferase substrate binding family protein
- RNA methyltransferase, TrmH family
- rRNA methyltransferase
- tRNA (guanosine-2'-O-)-methyltransferase, TrmH family
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3612990..3613718
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
(12F)
ASP0581:
EL334_RS07445 (rlmB)
(19F)
ATCC 49619:
EL263_RS07040 (rlmB)
(23F)
ATCC 700669:
SPN23F_RS07175 (rlmB)
(14)
INV200:
SPNINV200_RS06925 (rlmB)
(14)
JJA:
SPJ_RS06725 (rlmB)
(19F)
MDRSPN001:
MDRSPN_RS03405 (rlmB)
(19A)
SP49:
BMJ42_RS07490 (rlmB)
(1)
SPN032672:
SPN032672_RS01995 (rlmB)
(3)
SPN034156:
SPN034156_RS01965 (rlmB)
(3)
SPN034183:
SPN034183_RS06915 (rlmB)
(3)
SPN994038:
SPN994038_RS06820 (rlmB)
(3)
SPN994039:
SPN994039_RS06820 (rlmB)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKTNDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSE
D39 MKTNDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSE
D39V MKTNDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSE
Hungary19A-6 MKTNDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSE
EF3030 MKTNDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSE
************************************************************
TIGR4 ITEGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATN
D39 MTEGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATN
D39V MTEGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATN
Hungary19A-6 MTEGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATN
EF3030 MTEGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATN
:***********************************************************
TIGR4 VSGVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTP
D39 VSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTP
D39V VSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTP
Hungary19A-6 VSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTP
EF3030 VSGVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTP
**********:*************************************************
TIGR4 CHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRN
D39 CHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRN
D39V CHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRN
Hungary19A-6 CHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRN
EF3030 CHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRN
************************************************************
TIGR4 RL
D39 RL
D39V RL
Hungary19A-6 RL
EF3030 RL
**