PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN002759000
• symbol^?: glyS
• synonym:
• description^?: glycine--tRNA ligase subunit beta

  descriptions from strain specific annotations:

  • glycine--tRNA ligase subunit beta
  • Glycyl-tRNA synthetase beta chain
  • glycyl-tRNA synthetase, beta subunit
  • glycine--tRNA ligase beta subunit
  • glycyl-tRNA synthetase beta subunit
  • glycine--tRNA ligase, beta subunit
  • glycyl-tRNA synthase subunit beta
  • glycyl-tRNA synthetase beta chain (Glycine--tRNA ligasebeta chain) (GlyRS)
• strand^?: -
• coordinates^?: 3629881..3631917
• occurrence^?: in 100% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS07245 (glyS)
(2)
D39:
SPD_RS06955 (glyS)
(2)
D39V:
SPV_RS06950 (glyS)
(19A)
Hungary19A-6:
SPH_RS07705 (glyS)
(19F)
EF3030:
EF3030_RS06935 (glyS)
(6B)^?
670-6B:
SP670_RS04070 (glyS)
(6A)
6A-10:
HKM25_RS06865 (glyS)
(5)
70585:
SP70585_RS07495 (glyS)
(19F)
A026:
T308_RS03725 (glyS)
(3)
A66:
A66_RS06550 (glyS)
(11A)
AP200:
SPAP_RS07395 (glyS)
(12F)
ASP0581:
EL334_RS07535 (glyS)
(19F)
ATCC 49619:
EL263_RS07125 (glyS)
(23F)
ATCC 700669:
SPN23F_RS07260 (glyS)
(19F)
BM6001:
ODS73_RS07540 (glyS)
(1)
BVJ1JL:
JN057_RS07160 (glyS)
(14)
CGSP14:
SPCG_RS07570 (glyS)
(19F)
G54:
SPG_RS06990 (glyS)
(1)
gamPNI0373:
HMPREF1038_RS07140 (glyS)
(3)
HU-OH:
EL271_RS07245 (glyS)
(19A)
Hu15:
SPNHU15_RS07145 (glyS)
(19A)
Hu17:
SPNHU17_RS07070 (glyS)
(1)
INV104:
INV104_RS07205 (glyS)
(14)
INV200:
SPNINV200_RS07025 (glyS)
(14)
JJA:
SPJ_RS06810 (glyS)
(19F)
MDRSPN001:
MDRSPN_RS03320 (glyS)
(1)
NCTC7465:
AT689_RS06700 (glyS)
(2)
NCTC7466:
DQM66_RS06950 (glyS)
(4)
NU83127:
EL277_RS07325 (glyS)
(3)
OXC141:
SPNOXC_RS06980 (glyS)
(1)
P1031:
SPP_RS07355 (glyS)
(2)
R6:
SPR_RS06630 (glyS)
(19A)
SP49:
BMJ42_RS07575 (glyS)
(1)
SPN032672:
SPN032672_RS02090 (glyS)
(3)
SPN034156:
SPN034156_RS02050 (glyS)
(3)
SPN034183:
SPN034183_RS07000 (glyS)
(3)
SPN994038:
SPN994038_RS06905 (glyS)
(3)
SPN994039:
SPN994039_RS06905 (glyS)
(3)
SPNA45:
SPNA45_RS04230 (glyS)
(19F)
ST556:
MYY_RS04200 (glyS)
(19F)
Taiwan19F-14:
SPT_RS03985 (glyS)
(19A)
TCH8431/19A:
HMPREF0837_RS05150 (glyS)
(4)
Xen35:
CXP32_RS07340 (glyS)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MTKNLLVELGLEELPAYVVTPSEKQLGEKMAAFLKGKRLSFEAIQTFSTPRRLAVRVTGL
  D39             MTKNLLVELGLEELPAYVVTPSEKQLGEKMAAFLKENRLSFEAIQTFSTPRRLAVRVTGL
  D39V            MTKNLLVELGLEELPAYVVTPSEKQLGEKMAAFLKENRLSFEAIQTFSTPRRLAVRVTGL
  Hungary19A-6    MTKNLLVELGLEELPAYVVTPSEKQLGEKMAAFLKENRLSFEAIQTFSTPRRLAVRVTGL
  EF3030          MTKNLLVELGLEELPAYVVTPSEKQLGEKMAAFLKGKRLSFEAIQTFSTPRRLAVRVTGL
                  *********************************** :***********************
  
  TIGR4           ADKQSDLTEDFKGPAKKIALDSDGNFTKAAQGFVRGKGLTVEDIEFREIKGEEYVYVTKE
  D39             SDKQSDLTEDFKGPAKKIALDSDGNFTKAAQGFVRGKGLTVEDIEFREIKGEEYVYVTKE
  D39V            SDKQSDLTEDFKGPAKKIALDSDGNFTKAAQGFVRGKGLTVEDIEFREIKGEEYVYVTKE
  Hungary19A-6    SDKQSDLTEDFKGPAKKIALDSDGNFTKAAQGFVRGKGLTVEDIEFREIKGEEYVYVTKE
  EF3030          SDKQSDLTEDFKGPAKKIALDSDGNFTKAAQGFVRGKGLTVEDIEFREIKGEEYVYVTKE
                  :***********************************************************
  
  TIGR4           EIGQAVEAIVPGIVDVLKSLTFPVSMHWAGNSFEYIRPVHTLTVLLDEQEFDLDFLDIKG
  D39             EVGQAVEAIVPGVVDVLKSLTFPVSMHWAGNSFEYIRPVHTLTVLLDEQEFDLDFLDIKG
  D39V            EVGQAVEAIVPGVVDVLKSLTFPVSMHWAGNSFEYIRPVHTLTVLLDEQEFDLDFLDIKG
  Hungary19A-6    EVGQSVEAIVPGVVDVLKSLTFPVSMHWAGNSFEYIRPVHTLTVLLDEQEFDLDFLDIKG
  EF3030          EIGQAVEAIVPGIVDVLKSLTFPVSMHWAGNSFEYIRPVHTLTVLLDEEEFDLDFLDIKG
                  *:**:*******:***********************************:***********
  
  TIGR4           SRVSRGHRFLGQETKIQSALSYEEDLRKQFVIADPCEREQMIVDQIKEIEAKHGVRIEID
  D39             GRVSRGHRFLGKETKIQSALSYEEDLRKQFVIADPCEREQMIVDQIKKIEAKHGVRIEID
  D39V            GRVSRGHRFLGKETKIQSALSYEEDLRKQFVIADPCEREQMIVDQIKKIEAKHGVRIEID
  Hungary19A-6    SRVSRGHRFLGKETKIQSALSYEEDLRKQFVIADPCEREQMIVDQIKEIEAKHGVRIEID
  EF3030          GRVSRGHRFLGKETKIQSALSYEEDLRKQFVIADPCEREQMIVDQIKEIEAKHGVRIEID
                  .**********:***********************************:************
  
  TIGR4           ADLLNEVLNLVEYPTAFMGSFDAKYLEVPEEVLVTSMKEHQRYFVVRDQDGKLLPNFISV
  D39             ADLLNEVLNLVEYPTAFMGSFDAKYLEVPEEVLVTSMKEHQRYFVVRDQDGKLLPNFISV
  D39V            ADLLNEVLNLVEYPTAFMGSFDAKYLEVPEEVLVTSMKEHQRYFVVRDQDGKLLPNFISV
  Hungary19A-6    ADLLNEVLNLVEYPTAFMGSFDAKYLEVPEEVLVTSMKEHQRYFVVRDQDGKLLPNFISV
  EF3030          ADLLNEVLNLVEYPTAFMGSFDAKYLEIPEEVLVTSMKEHQRYFVVRDQDGKLLPNFISV
                  ***************************:********************************
  
  TIGR4           RNGNAERLKNVIKGNEKVLVARLEDGEFFWREDQKLVISDLVEKLNNVTFHEKIGSLREH
  D39             RNGNAERLKNVIKGNEKVLVARLEDGEFFWREDQKLVISDLVEKLNNVTFHEKIGSLREH
  D39V            RNGNAERLKNVIKGNEKVLVARLEDGEFFWREDQKLVISDLVEKLNNVTFHEKIGSLREH
  Hungary19A-6    RNGNAERLKNVIKGNEKVLVARLEDGEFFWREDQKLVISDLVEKLNNVTFHEKIGSLREH
  EF3030          RNGNAERLKNVIKGNEKVLVARLEDGEFFWREDQKLVISDLVEKLNNVTFHEKIGSLREH
                  ************************************************************
  
  TIGR4           MIRTGQITVLLAEKASLSVDETVDLARAAAIYKFDLLTGMVGEFDELQGIMGEKYTLLAG
  D39             MIRTGQITVLLAEKAGLSVDETVDLARAAAIYKFDLLTGMVGEFDELQGIMGEKYTLLAG
  D39V            MIRTGQITVLLAEKAGLSVDETVDLARAAAIYKFDLLTGMVGEFDELQGIMGEKYTLLAG
  Hungary19A-6    MIRTGQITVLLAEKAGLSVDETVDLARAAAIYKFDLLTGMVGEFDELQGIMGEKYTLLAG
  EF3030          MIRTGQITVLLAEKAGLSVDETVDLARAAAIYKFDLLTGMVGEFDELQGIMGEKYTLLAG
                  ***************.********************************************
  
  TIGR4           ETPAVAAAIREHYMPTSAEGELPESKVGAVLAIADKLDTILSFFSVGLIPSGSNDPYALR
  D39             ETPAVAAAIREHYMPTSAEGELPESKVGAVLAIADKLDTILSFFSVGLIPSGSNDPYALR
  D39V            ETPAVAAAIREHYMPTSAEGELPESKVGAVLAIADKLDTILSFFSVGLIPSGSNDPYALR
  Hungary19A-6    ETPAVAAAIREHYMPTSAEGELPESKVGAVLAIADKLDTILSFFSVGLIPSGSNDPYALR
  EF3030          ETPAVAAAIREHYMPTSAEGELPESKVGAVLAIADKLDTILSFFSVGLIPSGSNDPYALR
                  ************************************************************
  
  TIGR4           RATQGVVRILDAFGWHIAMDELIDSLYALKFDSLTYENKAEVMDFIKARVDKMMGSTPKD
  D39             RATQGVVRILDAFGWHIAMDELIDSLYALKFDSLTYENKAEVMDFIKARVDKMMGSTPKD
  D39V            RATQGVVRILDAFGWHIAMDELIDSLYALKFDSLTYENKAEVMDFIKARVDKMMGSTPKD
  Hungary19A-6    RATQGVVRILDAFGWHIAMDELIDSLYALKFDSLTYENKAEVMDFIKARVDKMMGSTPKD
  EF3030          RATQGVVRILDAFGWHIAMDELIDSLYALKFDSLTYENKAEVMNFIKARVDKMMGSTPKD
                  *******************************************:****************
  
  TIGR4           IKEAVLAGSNFVVADMLEAASALVEVSKEEDFKPSVESLSRAFNLAEKAEGVATVDSALF
  D39             IKEAVLAGSNFVVADMLEAASALVEVSKEEDFKPSVESLSRAFNLAEKAEGVATVDSALF
  D39V            IKEAVLAGSNFVVADMLEAASALVEVSKEEDFKPSVESLSRAFNLAEKAEGVATVDSALF
  Hungary19A-6    IKEAVLAGSNFVVADMLEAASALVEVSKEEDFKPSVESLSRAFNLAEKAEGVATVDSALF
  EF3030          IKEAVLAGSNFVVADMLEAASALVEVSKEEDFKPSVESLSRAFNLAEKAEGVATVDSALF
                  ************************************************************
  
  TIGR4           ENDQEKALAEAVETLILSGPASQQLKQLFALSPVIDAFFENTMVMAEDQAVRQNRLAILS
  D39             ENDQEKALAEAVETLVLSGPASQQLKQLFALSPVIDAFFENTMVMAEDQAVRQNRLAILS
  D39V            ENDQEKALAEAVETLVLSGPASQQLKQLFALSPVIDAFFENTMVMAEDQAVRQNRLAILS
  Hungary19A-6    ENDQEKALAEAVETLILSGPASQQLKQLFALSPVIDAFFENTMVMAEDQAVRQNRLAILS
  EF3030          ENDQEKALAEAVETLVLSGPASQQLKQLFALSPVIDAFFENTMVMAEDQAVRQNRLAILS
                  ***************:********************************************
  
  TIGR4           QLTKKAAKFACFNQINTK
  D39             QLTKKAAKFACFNQINTK
  D39V            QLTKKAAKFACFNQINTK
  Hungary19A-6    QLTKKAAKFACFNQINTK
  EF3030          QLTKKAAKFACFNQINTK
                  ******************