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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002767000
- symbol?: yfmL
- synonym:
- description?: DEAD/DEAH box helicase
- DEAD/DEAH box helicase
- putative RNA helicase
- DEAD RNA helicase
- putative ATP-dependent RNA helicase YfmL
- RNA helicase
- ATP-dependent RNA helicase
- ATP-dependent RNA helicase, DEAD/DEAH box family
- ATP-dependent RNA helicase YfmL
- ATP-dependent helicase
- ATP-dependent RNA helicase, DEAD/DEAH box family protein
- conserved hypothetical protein
- helicase conserved C-terminal domain protein
- Superfamily II DNA and RNA helicase
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3640474..3641556
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKTKLPTEWQELSDQLGFQEFTPIQTQLFEPLLAGENLLGVSQTGTGKTLAYLLPSLLRL
D39 MKTKLPTEWQELSDQLGFQEFTPIQTQLFEPLLAGENLLGVSQTGTGKTLAYLLPSLLRL
D39V MKTKLPTEWQELSDQLGFQEFTPIQTQLFEPLLAGENLLGVSQTGTGKTLAYLLPSLLRL
Hungary19A-6 MKTKLPTEWQELSDQLGFQEFTPIQTQLFEPLLAGENLLGVSKTGTGKTLAYLLPSLLRL
EF3030 MKTKLPTEWQELSDQLGFQEFTPIQTQLFEPLLAGENLLGVSQTGTGKTLAYLLPSLLRL
******************************************:*****************
TIGR4 QKKKAQQLLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKGPEILI
D39 QKKKAQQLLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKGPEILI
D39V QKKKAQQLLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKGPEILI
Hungary19A-6 QKKKAQQLLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKGPEILI
EF3030 QKKKAQQLLILAPNTELAGQIFDVCKTWAKASGLTAQLFLSGSSQKRQIERLKKGPEILI
*****************************:* ****************************
TIGR4 GTPGRIFELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT
D39 GTPGRIFELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT
D39V GTPGRIFELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT
Hungary19A-6 GTPGRIFELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLIYMSATT
EF3030 GTPGRIFELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT
*****************************************************:******
TIGR4 KFDQEKIVPNTRTIDLSDQKLDNIQHFYMQVDQRHRVDMLRKLAHVEDFRGLVFFNSLSD
D39 KFDQEKIVPNTRTIDLSDQKLDNIQHFYMQVDQRHRVDMLRKLAHVEDFRGLVFFNSLSD
D39V KFDQEKIVPNTRTIDLSDQKLDNIQHFYMQVDQRHRVDMLRKLAHVEDFRGLVFFNSLSD
Hungary19A-6 KFDQEKIVPNTRTIDLSDQKLDNIQHFYMQVDQRHRVDMLRKLAHVEDFRGLVFFNSLSD
EF3030 KFDQEKIVPNTRTIDLSDQKLDNIQHFYMQVDQRHRVDMLRKLAHVEDFRGLVFFNSLSD
************************************************************
TIGR4 LGNAEEKLQYRDILAVSLASDVNVKFRKIILEKFKDNQLTLLLATDLLARGIDIDSLECV
D39 LGNAEEKLQYRDILAVSLASDVNVKFRKIILEKFKDNQLTLLLATDLLARGIDIDSLECV
D39V LGNAEEKLQYRDILAVSLASDVNVKFRKIILEKFKDNQLTLLLATDLLARGIDIDSLECV
Hungary19A-6 LGNAEEKLQYRDILAVSLASDVNVKFRKVILEKFKDNQLTLLLATDLLARGIDIDSLECV
EF3030 LGNAEEKLQYRDILTVSLASDVNVKFRKIILEKFKDNQLTLLLATDLLARGIDIDSLECV
**************:*************:*******************************
TIGR4 VNFDIPRDSETYTHRAGRTGRMGKEGYVITLVTHPEEIKKLKKFASIREIVLKNQELYIK
D39 VNFDIPRDSETYTHRAGRTGRMGKEGYVITLVTHPEEIKKLKKFASIREIVLKNQELYIK
D39V VNFDIPRDSETYTHRAGRTGRMGKEGYVITLVTHPEEIKKLKKFASIREIVLKNQELYIK
Hungary19A-6 VNFDIPRDSETYTHRAGRTGRMGKEGYVITLVTHPEEIKKLKKFASIREIVLKNQELYIK
EF3030 VNFDIPRDSETYTHRAGRTGRMGKEGYVITLVTHSEEIKKLKKFASIREIVLKNQELYIK
**********************************.*************************