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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002839000
- symbol?: IS1239
- synonym:
- description?: IS30 family transposase
- IS30 family transposase
- insertion sequence IS1239 putative transposase (pseudogene)
- Transposase
- IS1239 transposase
- integrase core domain protein
- insertion sequence IS1239 putative transposase
- integrase
- IS1239, transposase
- IS1239, transposase, putative
- IS1239 transposase (pseudogene)
- IS30 family transposase ISSpn8
- ISSpn8 transposase
- putative IS1239, transposase
- Transposase-like protein, IS1239
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3645485..3646573
- occurrence?: in 95% of 41 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
D39 MQDNYTTKAKHLTIDSRRLIERWKKEGKSNREIASLLGKAPQTIHTEIKRGTVRQCLGKG
D39V MQDNYTTKAKHLTIDSRRLIERWKKEGKSNREIASLLGKAPQTIHTEIKRGTVRQCLGKG
Hungary19A-6 MQNHYTTKGEHLTIDSRRLIERWKKEGKSNREIASLLGKVPQTIHTEIKRGTVRQCLGKG
EF3030 MQNHYTTKGEHLTIDSRRLIERWKKEGKSNREIASLLGKVPQTIHTEIKRGTVRQCLGKG
**::****.:*****************************.********************
D39 RFKEVYSADYAQQSYENNRKRSVKKSSVTKELKEKILHYHNQKFSPEMMVMAKGVNVGIS
D39V RFKEVYSADYAQQSYENNRKRSVKKSSVTKELKEKILHYHNQKFSPEMMVMAKGVNVGIS
Hungary19A-6 RFKEVYSADYAQQSYENNRKRSVKKSSLTKELKEKILHYHNQKFSPEMMVMAKGVNVGIS
EF3030 RFKEVYSADYAQQSYENNRKRSVKKSSLTKELKEKILHYHNQKFSPEMMVMAKGVNVGIS
***************************:********************************
D39 TIYYWIHHGKLGLSKQDLLYPRKGKALKKQASTNFKPVGQSIEQRSEAINLRLENGHYEI
D39V TIYYWIHHGKLGLSKQDLLYPRKGKALKKQASTNFKPVGQSIEQRSEAINLRLENGHYEI
Hungary19A-6 TIYYWIHHGKLGLSKQDLLYPRKGKVLKKQASTNFKPAGQSIAQRPEAINLRLENGHYEI
EF3030 TIYYWIHHGKLGLSKQDLLYPRKGKALKKQASTNFKPAGQSIEQRLEAINFRLENGHYEI
*************************.***********.**** ** ****:*********
D39 DTVLLTRAKNYCLLVLTDRKSRHQIIRLIPNKSAEVVNQALKLILKQHKILSITADNGTE
D39V DTVLLTRAKNYCLLVLTDRKSRHQIIRLIPNKSAEVVNQALKLILKQHKILSITADNGTE
Hungary19A-6 DTVLLTRSKNYCLLVLTDRKSRHQIIRLIPNKSAEVVNQALKLILKQHKILSITADNGTE
EF3030 DTVLLTRAKNYCLLVLTDRKSRHQIIRLIPNKSADVVNQALKLILKQHKILSITADNGTE
*******:**************************:*************************
D39 FNRLFDVFSEEHIYYAHPYASWERGTNENHNRFIRRWLPKGTNKMTPKEVAFIEKWINNY
D39V FNRLFDVFSEEHIYYAHPYASWERGTNENHNRFIRRWLPKGTNKMTPKEVAFIEKWINNY
Hungary19A-6 FNRLSDVFSEEHIYYAHPYASWERGTNENHNRFIRRWLPKGTKKMTPKEVAFIEKWINNY
EF3030 FNRLSNVFSEEHIYYAHPYASWERGTNENHNRLIRRWLPKGTKKMTPKEVAFIEKWINNY
**** :**************************:*********:*****************
D39 PKKYLDYKSPREDFWMANLNLKFSKMEIIFIKRFQ
D39V PKKYLDYKSPREDFWMANLNLKFSKMEIIFIKRFQ
Hungary19A-6 PKKCLDYKSPREDFWMANLNLKFSKMEIIFIKRFQ
EF3030 PKKCLDYKSPREDFLMANLNLKFSKMEIIFIKRFQ
*** ********** ********************