Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002842000
- symbol?: dapB
- synonym:
- description?: 4-hydroxy-tetrahydrodipicolinate reductase
- 4-hydroxy-tetrahydrodipicolinate reductase
- dihydrodipicolinate reductase
- putative dihydrodipicolinate reductase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3749916..3750683
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
(12F)
ASP0581:
EL334_RS07950 (dapB)
(19F)
ATCC 49619:
EL263_RS07525 (dapB)
(23F)
ATCC 700669:
SPN23F_RS07685 (dapB)
(14)
INV200:
SPNINV200_RS07430 (dapB)
(14)
JJA:
SPJ_RS07250 (dapB)
(19F)
MDRSPN001:
MDRSPN_RS06735 (dapB)
(19A)
SP49:
BMJ42_RS07985 (dapB)
(1)
SPN032672:
SPN032672_RS02515 (dapB)
(3)
SPN034156:
SPN034156_RS02445 (dapB)
(3)
SPN034183:
SPN034183_RS07395 (dapB)
(3)
SPN994038:
SPN994038_RS07300 (dapB)
(3)
SPN994039:
SPN994039_RS07300 (dapB)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MSIRVIIAGFKGKMGQAACQMVLTDPDLDLVAVLDPFESESEWQGIPVFKDKADLAGFEA
D39 MSIRVIIAGFKGKMGQAACQMVLTDPDLDLVAVLDPFESESEWQGIPVFKDKADLAGFEA
D39V MSIRVIIAGFKGKMGQAACQMVLTDPDLDLVAVLDPFESESEWQGIPVFKDKADLAGFEA
Hungary19A-6 MSIRVIIAGFKGKMGQAACQMVLTDSDLDLVAVLDPFESESEWQGIPVFKDKADLAGFEA
EF3030 MSIRVIIAGFKGKMGQAACQMVLTDPDLDLVAVLDPFESESEWQGIPVFKDKADLAGFEA
*************************.**********************************
TIGR4 DVWVDFTTPAVAYENTRFALENGFAPVVGTTGFTSEEIAELKEFSRAQDLGGLIAPNFAL
D39 DVWVDFTTPAVAYENTRFALENGFAPVVGTTGFTSEEIAELKEFSRAQDLGGLIAPNFAL
D39V DVWVDFTTPAVAYENTRFALENGFAPVVGTTGFTSEEIAELKEFSRAQDLGGLIAPNFAL
Hungary19A-6 DVWVDFTTPAVAYENTRFALENGFAPVVGTTGFTSEEIAELKEFSRAQDLGGLIAPNFAL
EF3030 DVWIDFTTPAVAYENTRFALENGFAPVVGTTGFTSEEIAELKEFSRAQDLGGLIAPNFAL
***:********************************************************
TIGR4 GAVLLMQFATQAAKYFPNVEIIELHHDKKKDAPSGTAIKTAELMAEVRESIQQGAADEEE
D39 GAVLLMQFATQAAKYFPNVEIIELHHDKKKDAPSGTAIKTAELMAEVRESIQQGAADEEE
D39V GAVLLMQFATQAAKYFPNVEIIELHHDKKKDAPSGTAIKTAELMAEVRESIQQGAADEEE
Hungary19A-6 GAVLLMQFATQAAKYFPNVEIIELHHDKKKDAPSGTAIKTAELMAEVRESIQQGAADEEE
EF3030 GAVLLMQFATQAAKYFPNVEIIELHHDKKKDAPSGTAIKTAELMAEVRESIQQGAADEEE
************************************************************
TIGR4 LIAGARGADFDGMRIHSVRLPGLVAHQEVIFGNQGEGLTLRHDSYDRISFMTGVNLGIKE
D39 LIAGARGADFDGMRIHSVRLPGLVAHQEVIFGNQGEGLTLRHDSYDRISFMTGVNLGIKE
D39V LIAGARGADFDGMRIHSVRLPGLVAHQEVIFGNQGEGLTLRHDSYDRISFMTGVNLGIKE
Hungary19A-6 LIAGARGADFDGMRIHSVRLPGLVAHQEVIFGNQGEGLTLRHDSYDRISFMTGVNLGIKE
EF3030 LIAGARGADFDGMRIHSVRLPGLVAHQEVIFGNQGEGLTLRHDSYDRISFMTGVNLGIKE
************************************************************
TIGR4 VVKRHELVYGLEHLL
D39 VVKRHELVYGLEHLL
D39V VVKRHELVYGLEHLL
Hungary19A-6 VVKRHELVYGLEHLL
EF3030 VVKRHELVYGLEHLL
***************