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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003042000
- symbol?: sifR
- synonym:
- description?: response regulator transcription factor
- response regulator transcription factor
- DNA-binding response regulator
- Response regulator
- response regulator protein
- Response regulator protein GraR
- transcriptional regulator
- Response regulator of two-component regulatory system SirRH
- response regulator receiver domain protein
- Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
- response regulator TCS01
- transcriptional regulatory, C terminal family protein
- Two-component response regulator
- two-component signal (TCS01) DNA-binding response regulator
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3949354..3950031
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MHKILLIEDDQVIRQQIGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPLFNG
D39 MHKILLIEDDQVIRQQIGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPLFNG
D39V MHKILLIEDDQVIRQQIGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPLFNG
Hungary19A-6 MHKILLIEDDQVIRQQIGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPLFNG
EF3030 MHKILLIEDDQVIRQQIGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPLFNG
************************************************************
TIGR4 YHWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSY
D39 YHWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSY
D39V YHWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSY
Hungary19A-6 YHWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSY
EF3030 YHWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSY
************************************************************
TIGR4 EFGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMREL
D39 EFGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMREL
D39V EFGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMREL
Hungary19A-6 EFGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMREL
EF3030 EFGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMREL
************************************************************
TIGR4 WNSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGYGLKHA
D39 WNSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGYGLKHA
D39V WNSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGYGLKHA
Hungary19A-6 WNSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGYGLKHA
EF3030 WNSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGYGLKHA
*********************************************