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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003071000
- symbol?: nanR
- synonym:
- description?: MurR/RpiR family transcriptional regulator
- MurR/RpiR family transcriptional regulator
- putative transcription regulator
- transcriptional regulator, RpiR family
- RpiR family transcriptional regulator
- phosphosugar-binding transcriptional regulator, putative
- putative HTH-type transcriptional regulator
- phosphosugar-binding transcriptional regulator
- Sialic acid utilization regulator, RpiR family
- SIS domain protein
- Conserved hypothetical protein
- phosphosugar-binding transcriptional regulator, RpiR family
- putative HTH-type transcriptional regulator YbbH
- putative phosphosugar-binding transcriptional regulator
- Transcriptional regulator
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3892790..3893641
- occurrence?: in 100% of 41 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MDKPDIATIIDSHFEEMTDLEQEIARYFLQAETITDDLSSQQVTQKLHISQAALTRFAKK
D39 MDKPDIATIIDSHFEEMTDLEQEIARYFLQAETITDDLSSQQVTQKLHISQAALTRFAKK
D39V MDKPDIATIIDSHFEEMTDLEQEIARYFLQAETITDDLSSQQVTQKLHISQAALTRFAKK
Hungary19A-6 MDKPDIATIIDSHFEEMTDLEQEIARYFLQAETITDDLSSQQVTQKLHISQAALTRFAKK
EF3030 MDKPDIATIIDSHFEEMTDLEQEIARYFLQAETITDDLSSQQVTQKLHISQAALTRFAKK
************************************************************
TIGR4 CGFTGYREFIFQYQHQAENQANQVSKHSPLTKRVLRSYSNMREQTQDLIDEIQLERIAQL
D39 CGFTGYREFIFQYQHQAENQANQVSKHSPLTKRVLRSYSNMREQTQDLIDEIQLERIAQL
D39V CGFTGYREFIFQYQHQAENQANQVSKHSPLTKRVLRSYSNMREQTQDLIDEIQLERIAQL
Hungary19A-6 CGFTGYREFIFQYQHQAENQANQVSKHSPLTKRVLRSYSNMREQTQDLIDEIQLERIAQL
EF3030 CGFTGYREFIFQYQHQAENQANQVSKHSPLTKRVLRSYSNMREQTQDLIDEIQLERIAQL
************************************************************
TIGR4 IEDAERIYFFGTGSSGLVAREMKLRFMRLGVVCEALTDQDGFAWTTSIMDENCLVLGFSL
D39 IEDAERIYFFGTGSSGLVAREMKLRFMRLGVVCEALTDQDGFAWTTSIMDENCLVLGFSL
D39V IEDAERIYFFGTGSSGLVAREMKLRFMRLGVVCEALTDQDGFAWTTSIMDENCLVLGFSL
Hungary19A-6 IEDAERIYFFGTGSSGLVAREMKLRFMRLGVVCEALTDQDGFAWTTSIMDENCLVLGFSL
EF3030 IEDAERIYFFGTGSSGLVAREMKLRFMRLGVVCEALTDQDGFAWTTSIMDENCLVLGFSL
************************************************************
TIGR4 SGSTPSILDSLLDAKEMGAKTVLFTSVPNKDSQTYTETVLVATHSQPSYIQRISAQLPML
D39 SGSTPSILDSLLDAKEMGAKTVLFTSVPNKNSQTYTETVLVATHSQPSYIQRISAQLPML
D39V SGSTPSILDSLLDAKEMGAKTVLFTSVPNKNSQTYTETVLVATHSQPSYIQRISAQLPML
Hungary19A-6 SGSTPSILDSLLDAKEMGAKTVLFTSVPNKDSQTYTETVLVATHSQPSYIQRISAQLPML
EF3030 SGSTPSILDSLLDAKEMGAKTVLFTSVPNKDSQTYTETVLVATHSQPSYIQRISAQLPML
******************************:*****************************
TIGR4 FFIDLIYAYFLEINRESKEKIFNSYWENKKLNGYRRQKRVRKS
D39 FFIDLIYAYFLEINRESKEKIFNSYWENKKLNGYRRQKRVRKS
D39V FFIDLIYAYFLEINRESKEKIFNSYWENKKLNGYRRQKRVRKS
Hungary19A-6 FFIDLIYAYFLEINRESKEKIFNSYWENKKLNGYRRQKRVRKS
EF3030 FFIDLIYAYFLEINRESKEKIFNSYWENKKLNGYRRQKRVRKS
*******************************************