Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003142000
- symbol?: sun
- synonym: rsmB
- description?: 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB
- 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB
- ribosomal RNA small subunit methyltransferase B
- putative ribosomal RNA small subunit methyltransferase
- 16S rRNA (cytosine(967)-C(5))-methyltransferase
- 16S rRNA methyltransferase
- rRNA methyltransferase RsmB
- rRNA-specific 5-methylcytidine transferase
- rRNA methylase
- tRNA and rRNA cytosine-C5-methylase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3969465..3970778
- occurrence?: in 100% of 41 strains
⊟Orthologs[edit | edit source]
SPN034156:
SPN034156_RS03325 (rsmB)
SPN034183:
SPN034183_RS08285 (rsmB)
SPN994038:
SPN994038_RS08185 (rsmB)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTVARKLTL
D39 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVARKLTL
D39V MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVARKLTL
Hungary19A-6 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTVARKLTL
EF3030 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVARKLTL
************************************** *********************
TIGR4 EWYLSHFIEDRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAKLRKKGSEKLVN
D39 EWYLSHFIEDRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAKLRKKGSEKLVN
D39V EWYLSHFIEDRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAKLRKKGSEKLVN
Hungary19A-6 EWYLSHFIEDRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAKLRKKGSEKLVN
EF3030 EWYLSHFIEDRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAKLRKKGSEKLVN
************************************************************
TIGR4 AVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESLLVRNKA
D39 AVLRRILREDWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESLLVRNKA
D39V AVLRRILREDWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESLLVRNKA
Hungary19A-6 ALLRRILREGWPDISSIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESLLVRNKA
EF3030 AVLRRILREGWPDIANIKRKNKRDSIAYSLPVWLVTKLKEEYGEERAKAIFESLLVRNKA
*:*******.****:.*******************:************************
TIGR4 SIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESSQLVAPT
D39 SIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESSQLVAPT
D39V SIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESSQLVAPT
Hungary19A-6 SIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESSQLVAPT
EF3030 SIRVTDLSRKEEIQALLEANSSLLATTGLVKEQGHFAGHNLFADGAITIQDESSQLVAPT
********************.***************************************
TIGR4 LDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVEDRVQT
D39 LDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVEDRVQT
D39V LDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVEDRVQT
Hungary19A-6 LDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVADRVQT
EF3030 LDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVEDRVQT
****************************************************** *****
TIGR4 QKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGS
D39 QKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGS
D39V QKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGS
Hungary19A-6 QKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGS
EF3030 QKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGS
************************************************************
TIGR4 VCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEFEQVKLEHECKDIMKDGCILITPE
D39 VCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEFEQVKLEHECKDIMKDGCILITPE
D39V VCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEFEQVKLEHECKDIMKDGCILITPE
Hungary19A-6 VCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEFEQVKLEHECKDIMKDGCILITPE
EF3030 VCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEFEQVKLEHECKDIMKDGCILITPE
************************************************************
TIGR4 LYGSDGFFISQFRKISD
D39 LYGSDGFFISQFRKISD
D39V LYGSDGFFISQFRKISD
Hungary19A-6 LYGSDGFFISQFRKISD
EF3030 LYGSDGFFISQFRKISD
*****************