Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003205000
- symbol?: gspA_6
- synonym:
- description?: glycosyltransferase
- glycosyltransferase
- glycosyl transferase, family 8
- glycosyl hydrolase family 8
- glycosyl transferase family 8
- putative glycosyltransferase
- glycosyl transferase 8 family protein
- Glycosyltransferase-stabilizing protein Gtf2
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4135378..4136598
- occurrence?: in 37% of 43 strains
⊟Orthologs[edit | edit source]
A026:
—
A66:
—
AP200:
—
G54:
—
gamPNI0373:
—
HU-OH:
—
OXC141:
—
P1031:
—
R6:
—
SPN034183:
—
SPN994038:
—
SPN994039:
—
SPNA45:
—
ST556:
—
Taiwan19F-14:
—
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MRNTKRAVVFAGDYAYIRQIETAMKSLCRHNSHLKIYLLNQDIPQEWFSQIRIYLQEMGG
Hungary19A-6 MLQDKKSVVFAGDYAYIRQIETAMKSLCRHNSHLKIYLLNQDIPQEWFSQIRIYLQEMGG
EF3030 MLQDKKSVVFAGDYAYIRQIETAMKSLCRHNSHLKIYLLNQDIPQEWFSQIRIYLQKMGG
* : *::*************************************************:***
TIGR4 DLIDCKLIGSQFQMNWSNKLPHINHMTFARYFIPDFVTEDKVLYLDSDLIVTGDLTDLFE
Hungary19A-6 DLIDCKLIGSQFQMNWSNKLPHINHMTFARYFIPDFVTEDKVLYLDSDLIVTGDLTDLFE
EF3030 DLIDCKLIGSQFQMNWSNKLPHINHMTFARYFIPDFVTEDKVLYLDSDLIVTGDLTDLFE
************************************************************
TIGR4 LDLGENYLAAARSCFGAGVGFNAGVLLINNKKWGSETIRQKLIDLTEKEHENVEEGDQSI
Hungary19A-6 LDLGENYLAAARSCFGAGVGFNAGVLLINNKKWGSETIRQKLIDLTEKEHENVEEGDQSI
EF3030 LDLGENYLAAARSCFGAGVGFNAGVLLINNKKWGSETIRQKLIDLTEKEHENVEEGDQSI
************************************************************
TIGR4 LNMLFKDQYSSLEDQYNFQIGYDYGAATFKHQFIFDIPLEPLPLILHYISQDKPWNQFSV
Hungary19A-6 LNMLFKDQYSSLEDQYNFQIGYDYGAAAFKHQFIFDIPLEPLPLILHYISQDKPWNQFSV
EF3030 LNMLFKDQYSSLEDQYNFQIGYDYGAAAFKHQFIFDIPLEPLPLILHYISQDKPWNQFSV
***************************:********************************
TIGR4 GRLREVWWEYSLMDWSVILNEWFSKSVKYPSKSQIFKLQCVNLTNSWCVEKIDYLAEQLP
Hungary19A-6 GRLREVWWEYSLMDWSVILNEWFSKSVKYPSKSQIFKLQCVNLTNSWCVEKIDYLAEQLP
EF3030 GRLREVWWEYSLMDWSVILNEWFSKSVKYPSKSQIFKLQCVNLTNSWCVEKIDYLAEQLP
************************************************************
TIGR4 EVHFHIVAYTNMANELLALTRFPNVTVYPNSLPMLLEQIVIASDLYLDLNHDRKLEDAYE
Hungary19A-6 EVHFHIVAYTNMANELLALTRFPNVTVYPNSLPMLLEQIVIASDLYLDLNHDRKLEDAYE
EF3030 EVHFHIVAYTNMANELLALTRFPNVTVYPNSLPMLLEQIVIASDLYLDLNHDRKLEDAYE
************************************************************
TIGR4 FVLKYKKPMIAFDNTCSENLSEISYEGIYPSSIPKKMVAAIRSYMR
Hungary19A-6 FVLKYKKPMIAFDNTCSENLSEISYEGIYPSSIPKKMVAAIRSYMR
EF3030 FVLKYKKPMIAFDNTCSENLSEISYEGIYPSSIPKKMVAAIRSYMR
**********************************************