Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003278000
- symbol?: dasA
- synonym:
- description?: sugar ABC transporter substrate-binding protein
- sugar ABC transporter substrate-binding protein
- ABC transporter substrate-binding protein - sugar transport
- ABC transporter, substrate-binding protein
- ABC superfamily ATP binding cassette transporter, substrate-binding protein
- ABC transporter, sugar-binding protein
- ABC transporter substrate-binding protein
- Diacetylchitobiose binding protein DasA
- Multiple sugar ABC transporter, substrate-binding protein
- Putative ABC transporter substrate-binding protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4194870..4199303
- occurrence?: in 39% of 41 strains
⊟Orthologs[edit | edit source]
A026:
—
A66:
—
AP200:
—
ASP0581:
—
ATCC 49619:
—
ATCC 700669:
—
SPN034156:
—
SPN034183:
—
SPN994038:
—
SPN994039:
—
SPNA45:
—
ST556:
—
Taiwan19F-14:
—
TCH8431/19A:
—
Xen35:
—
⊟Genome Viewer[edit | edit source]
| D39 | |
| D39V | |
| Hungary19A-6 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
D39 MRKGTMLSVVAGLSLAILAGCSGGTNSKQASSSNDIKVWVQFSDETNEGKAWQKVVDNFN
D39V MRKGTMLSVVAGLSLAILAGCSGGTNSKQASSSNDIKVWVQFSDETNEGKAWQKVVDNFN
Hungary19A-6 MRKGTMLSVVAGLSLAILAGCSGGTNSKQASSSNDIKVWVQFSDETNEGKAWQKVVDNFN
************************************************************
D39 QSGKSKYKVVTEYIPRSGSGGGYEDKVNAAITTNSLPDVITLDGPNTAAYAKSKVITPLD
D39V QSGKSKYKVVTEYIPRSGSGGGYEDKVNAAITTNSLPDVITLDGPNTAAYAKSKVITPLD
Hungary19A-6 QSGKSKYKVVTEYIPRSGSGGGYEDKVNAAITTNSLPDVITLDGPNTAAYAKSKVITPLD
************************************************************
D39 DYLKDNNMDDVLDSIKQQGTYNGKFYAFGFSESNVGVYYNKKMFKEAGIAESELPTLEKP
D39V DYLKDNNMDDVLDSIKQQGTYNGKFYAFGFSESNVGVYYNKKMFKEAGIAESELPTLEKP
Hungary19A-6 DYLKDNNMDDVLDSIKQQGTYNGKFYAFGFSESNVGVYYNKKMFKEAGIAESELPTLEKP
************************************************************
D39 WTWDEFNTIAKKLKDHYNKPTIDFRINSNDEMLPYAYMPLIWSNNGSVVNEDGTKAEGYF
D39V WTWDEFNTIAKKLKDHYNKPTIDFRINSNDEMLPYAYMPLIWSNNGSVVNEDGTKAEGYF
Hungary19A-6 WTWDEFNTIAKKLKDHYNKPAIDFRINSNDEMLPYAYMPLIWSNNGSVVNEDGTKAEGYF
********************:***************************************
D39 NSKESVEAVQFIQNLVKEGYTTVSPVEKGFETGEYPMLLSGSWTIADMNTNYKDIDFGIL
D39V NSKESVEAVQFIQNLVKEGYTTVSPVEKGFETGEYPMLLSGSWTIADMNTNYKDIDFGIL
Hungary19A-6 NSKESVEAVQFIQNLVKEGYTTVSPVEKGFETGEYPMLLSGSWTIADMNTNYKDIDFGIL
************************************************************
D39 PYPVSSKTKKLVSPSGSWQLAVTTKSDKKEAASEFVKFATNTESSEIISLGNSVLPIRKS
D39V PYPVSSKTKKLVSPSGSWQLAVTTKSDKKEAASEFVKFATNTESSEIISLGNSVLPIRKS
Hungary19A-6 PYPVSSKTKKLVSPSGSWQLAVTTKSDKKEAASEFVKFATNTESSEIISLGNSVLPIRKS
************************************************************
D39 TIENIKDKVSEPMRFLMEQNSKTAHARPVVVAYPQVSRAFQQAMQDISYYEENPNVQKVL
D39V TIENIKDKVSEPMRFLMEQNSKTAHARPVVVAYPQVSRAFQQAMQDISYYEENPNVQKVL
Hungary19A-6 TIENIKDKVSEPMRFLMEQNSKTAHARPVVVAYPQVSRAFQQAMQDISYYEENPNVQKVL
************************************************************
D39 DTRTKEMQTAIDQSLK
D39V DTRTKEMQTAIDQSLK
Hungary19A-6 DTRTKEMQTAIDQSLK
****************