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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003280000
- symbol?: rbsR
- synonym:
- description?: LacI family transcriptional regulator
- LacI family transcriptional regulator
- LacI family DNA-binding transcriptional regulator
- LacI family regulatory protein
- sugar-binding transcriptional regulator, LacI family protein
- sugar-binding transcriptional regulator, LacI family
- Sucrose operon repressor (SCR operon regulatory protein)
- HTH-type transcriptional regulator DegA
- Ribose operon repressor
- sucrose operon repressor
- helix-turn-helix family protein
- LacI family transcription regulator
- M protein trans-acting positive regulator (Mga)
- Multiple sugar metabolism operon regulatory protein
- Sugar binding transcriptional regulator
- Transcriptional regulator
- transcriptional regulator, LacI family
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4201521..4207024
- occurrence?: in 100% of 41 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MVEQRKSITMKDVALEAGVSVGTVSRVINKEKGIKEVTLKKVEQAIKTLNYIPDYYARGM
D39 MVEQRKSITMKDVALEAGVSVGTVSRVINKEKGIKEVTLRKVQRAIKTLDYIPDNYARGM
D39V MVEQRKSITMKDVALEAGVSVGTVSRVINKEKGIKEVTLRKVQRAIKTLDYIPDNYARGM
Hungary19A-6 MVEQRKSITMKDVALEAGVSVGTVSRVINKEKGIKEVTLRKVQRAIKTLDYIPDNYARGM
EF3030 MVEQRKSITMKDVALEAGVSVGTVSRVINKEKGIKEVTLKKVEQAIKTLNYIPDYYARGM
***************************************:**::*****:**** *****
TIGR4 KKNRTETIAIIVPSIWHPFFSEFAMHVENEVYKRNNKLLLCSING-TNREQDYLEMLRHN
D39 KKNRTETIALIIPSIWHPFFSEFAYHVEKELLKYNYKLFICNADSDSQNEIEYIEMLKQN
D39V KKNRTETIALIIPSIWHPFFSEFAYHVEKELLKYNYKLFICNADSDSQNEIEYIEMLKQN
Hungary19A-6 KKNRTETIALIIPSIWHPFFSEFAYHVEKELLKYNYKLFICNADSDSQNEIEYIEMLKQN
EF3030 KKNRTETIAIIVPSIWHPFFSEFAMHVENKVYKRNNKLLLCSING-TNREQDYLEMLRHN
*********:*:************ ***::: * * **::*. :. ::.* :*:***::*
TIGR4 KVDGVVAITYSPIEHYLTSGIPFVSIDRTYSDIAIPCVSSDNDAGGREAAKQLISKGCQH
D39 KVDGIIGITYSDIDKYILSDLPFVSIDRHFSE-NVCYVTSANYKGGQTAAEELVRRDNKH
D39V KVDGIIGITYSDIDKYILSDLPFVSIDRHFSE-NVCYVTSANYKGGQTAAEELVRRDNKH
Hungary19A-6 KVDGIIGITYSDIDKYILSDLPFVSIDRHFSE-NVCYVTSANYKGGQTAAEELVRRDNKH
EF3030 KVDGVVAITYSPIEHYLTSGIPFVSIDRTYSDIAIPCVSSDNDAGGREAAKQLISKGCQH
****::.**** *::*: *.:******* :*: : *:* * **: **::*: :. :*
TIGR4 LAFVGGHNTTINETKRRRISFEKYVQEHKIPLSIFDLDETVTDYYGKLESFLEENSSIDG
D39 LAFIGSINMYENETILRSKGFREKAKELGVDVYNFEMKEPLINPEDQIRIFLQSHKEIDG
D39V LAFIGSINMYENETILRSKGFREKAKELGVDVYNFEMKEPLINPEDQIRIFLQSHKEIDG
Hungary19A-6 LAFIGSINMYENETILRSKGFREKAKELGVDVYNFEMKEPLINPEDQIRIFLQSHKEIDG
EF3030 LAFVGGHNTTINETKRRRISFEKYVQEHKIPLSIFDLDETVTDYYGKLESFLEENSSIDG
***:*. * *** * .*.: .:* : : *::.*.: : .::. **:.:..***
TIGR4 IFTINDFTALDVIEILEKNGKRIPHDVQIIGYDGIKMAGDRDYLLSTIEQPLEEMAKEAV
D39 IFTINDMMALRVISVMKELGKIAPDDYQIIGFDGLKTSVDQSYLVSTIVQDIGMMAKESV
D39V IFTINDMMALRVISVMKELGKIAPDDYQIIGFDGLKTSVDQSYLVSTIVQDIGMMAKESV
Hungary19A-6 IFTINDMMALRVISVMKELGKIAPDDYQIIGFDGLKTSVDQSYLVSTIVQDIGMMAKESV
EF3030 IFTINDFTALDVIEILEKNGKRIPHDVQIIGYDGIKMAGDRDYLLSTIEQPLEEMAKEAV
******: ** **.:::: ** *.* ****:**:* : *:.**:*** * : ****:*
TIGR4 RILFDIIDGKTV-NLQTILPVKFVEGKTTKNENKS
D39 AMILKMIKREEILEKRIVIPTYFWGDKTTKK---I
D39V AMILKMIKREEILEKRIVIPTYFWGDKTTKK---I
Hungary19A-6 AMILKMIKREEILEKRIVIPTYFWGDKTTKK---I
EF3030 RILFDIIDGKTV-NLQTILPVKFVEGKTTKNENKS
:::.:*. : : : : ::*. * .****: