Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003402000
- symbol?: rdgB
- synonym:
- description?: nucleoside-triphosphate diphosphatase
- nucleoside-triphosphate diphosphatase
- non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family protein
- HAM1 protein homolog
- dITP/XTP pyrophosphatase
- deoxyribonucleotide triphosphate pyrophosphatase
- deoxyribonucleotide triphosphate pyrophosphatase/uncharacterised domain fusion protein
- non-canonical purine NTP pyrophosphatase
- non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family
- Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific)
- deoxyribonucleotide triphosphate pyrophosphatase/unknown domain fusion protein
- HAM1 protein
- non-canonical purine NTP pyrophosphatase RdgB
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4453538..4454509
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MAGKRDSCGACRIMTNKIYEYKDDQDWYVGSYSIFGGVNSLSDYKTDFPLFEFSKIFGDE
D39 -------------MTNKIYEYKDDQNWYVGSYSIFGGVNSLSDYKADFPLFEFSKIFGDE
D39V -------------MTNKIYEYKDDQNWYVGSYSIFGGVNSLSDYKADFPLFEFSKIFGDE
Hungary19A-6 MAGKRDSCGACRIMTNKIYEYKDDQDWYVGSYSIFGGVNSLSDYQTDFPLFEFSKIFGDE
EF3030 MAGKRDSCGACRIMTNKIYEYKDDQDWYVGSYSIFGGVNSLSDYKTDFPLFEFSKIFGDE
************:******************::**************
TIGR4 EYGFPLSVTVLRYGSIYRLFSFVVDMLNQEMGRNLEVIQRHGALLLVENGQLLYVELPKE
D39 EYGFPLSVTVLRYGSTYRLFSFVVDMLNQEMGRNLEVIQRHGALLLVENGQLLYVELPKE
D39V EYGFPLSVTVLRYGSTYRLFSFVVDMLNQEMGRNLEVIQRHGALLLVENGQLLYVELPKE
Hungary19A-6 EYGFPLSVTVLRYGSTYRLFSFVVDMLNQEMGRNLEVIQRHGALLLVENGQLLYVELPKE
EF3030 EYGFPLSVTVLRYGSTYRLFSFVVDMLNQEMGRNLEVIQRHGALLLVENGQLLYVELPKE
*************** ********************************************
TIGR4 GVNVHDFFETSKVRETLLIATRNEGKTKEFRAIFDKLGYDVENLNDYPDLPEVAETGMTF
D39 GVNVHDFFETSKVRETLLIATRNEGKTKEFRAIFDKLGYDVENLNDYPDLPEVAETGMTF
D39V GVNVHDFFEISKVRETLLIATRNEGKTKEFRAIFDKLGYDVENLNDYPDLPEVAETGMTF
Hungary19A-6 GVNVHDFFETSKVRETLLIATRNEGKTKEFRAIFDKLGYDVENLNDYPDLPEVAETGMTF
EF3030 GVNVHDFFETSKVRETLLIATRNEGKTKEFRAIFDKLGYDVENLNDYPDLPEVAETGMTF
********* **************************************************
TIGR4 EENARLKAETISQLTGKMVLADDSGLKVDVLGGLPGVWSARFAGVGATDRENNAKLLHEL
D39 EENARLKAETISQLTGKMVLADDSGLKVDVLGGLPGVWSARFAGVGATDRENNAKLLHEL
D39V EENARLKAETISQLTGKMVLADDSGLKVDVLGGLPGVWSARFAGVGATDRENNAKLLHEL
Hungary19A-6 EENARLKAETISQLTGKMVLADDSGLKVDVLGGLPGVWSARFAGVGATDRENNAKLLHEL
EF3030 EENARLKAETISQLTGKMVLADDSGLKVDVLGGLPGVWSARFAGVGATDRENNAKLLHEL
************************************************************
TIGR4 AMVFELKDRSAQFHTTLVVASPNKESLVVEADWSGYINFEPKGENGFGYDPLFLVGETGE
D39 AMVFELKDRSAQFHTTLVVASPNKESLVVEADWSGYINFEPKGENGFGYDPLFLVGETGE
D39V AMVFELKDRSAQFHTTLVVASPNKESLVVEADWSGYINFEPKGENGFGYDPLFLVGETGE
Hungary19A-6 AMVFELKDRSAQFHTTLVVASPNKESLVVEADWSGYINFEPKGENGFGYDPLFLVGETGE
EF3030 AMVFELKDRSAQFHTTLVVASPNKESLVVEADWSGYINFEPKGENGFGYDPLFLVGETGE
************************************************************
TIGR4 SSAELTLEEKNSQSHRALAVKKLLEVFPSWQSKPSL
D39 SSAELTLEEKNSQSHRALAVKKLLEVFPSWQSKPSL
D39V SSAELTLEEKNSQSHRALAVKKLLEVFPSWQSKPSL
Hungary19A-6 SSAELTLEEKNSQSHRALAVKKLLEVFPSWQSKPSL
EF3030 SSAELTLEEKNSQSHRALAVKKLLEVFPSWQSKPSL
************************************