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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003422000
- symbol?: msmF
- synonym:
- description?: carbohydrate ABC transporter permease
- carbohydrate ABC transporter permease
- sugar ABC transporter, permease protein
- sugar ABC transporter permease
- multiple sugar-binding transport system permease protein
- Multiple sugar ABC transporter, membrane-spanning permease protein MsmF
- sn-glycerol-3-phosphate transport system
- ABC transporter, ATP-binding/permease protein
- ABC transporter, permease protein
- ABC transporter membrane-spanning permease - multiple sugars
- ABC-type sugar transport systems, permease component
- binding-protein-dependent transport system inner membrane component family protein
- Diacetylchitobiose uptake system permease protein NgcF
- Lactose transport system permease protein LacF
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4491605..4492471
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKKVLQKYWAWAFVVIPLLLQAIFFYVPMFQGAFYSFTNWTGLTYNYKFVGLNNFKLLFM
D39 MKKVLQKYWAWAFVVIPLLLQAIFFYVPMFQGAFYSFTNWTGLTYNYKFVGLNNFKLLFM
D39V MKKVLQKYWAWAFVVIPLLLQAIFFYVPMFQGAFYSFTNWTGLTYNYKFVGLNNFKLLFM
Hungary19A-6 MKKVLQKYWAWAFVVIPLLLQAIFFYVPMFQGAFYSFTNWTGLTYNYKFVGLNNFKLLFM
EF3030 MKKVLQKYWAWAFVVIPLLLQAIFFYVPMFQGAFYSFTNWTGLTYNYKFVGLNNFKLLFM
************************************************************
TIGR4 DPKFMNAIGFTAIIAIAMVVGEIALGIFIARVLNSKIKGQTFFRAWFFFPAVLSGLTVAL
D39 DPKFMNAIGFTAIITIAMVVGEIALGIFIARVLNSKIKGQTFFRSWFFFPAVLSGLTVAL
D39V DPKFMNAIGFTAIITIAMVVGEIALGIFIARVLNSKIKGQTFFRSWFFFPAVLSGLTVAL
Hungary19A-6 DPKFMNAIGFTAIITIAMVVGEIALGIFIARVLNSKIKGQTFFRAWFFFPAVLSGLTVAL
EF3030 DPKFMNAIGFTAIIAIAMVVGEIALGIFIARVLNSKIKGQTFFRAWFFFPAVLSGLTVAL
**************:*****************************:***************
TIGR4 IFKQVFNYGLPAIGNALHIEFFQTSLLGTKWGAIFAAVFVLLWQGVAMPIIIFLAGLQSI
D39 IFKQVFNYGLPAIGNALHIEFLQTSLLGTKWGAIFAAVFVLLWQGVAMPIIIFLAGLQSI
D39V IFKQVFNYGLPAIGNALHIEFLQTSLLGTKWGAIFAAVFVLLWQGVAMPIIIFLAGLQSI
Hungary19A-6 IFKQVFNYGLPAIGNALHIEFLQTSLLGTKWGAIFAAVFVLLWQGVAMPIIIFLAGLQSI
EF3030 IFKQVFNYGLPAIGNALHIEFFQTSLLGTKWGAIFAAVFVLLWQGVAMPIIIFLAGLQSI
*********************:**************************************
TIGR4 PTEITEAARIDGATSKQVFWNIELPYLLPSVSMVFILALKGGLTAFDQVFAMTGGGPNNA
D39 PTEITEAARIDGATSKQVFWNIELPYLLPSVSIVFILALKGGLTAFDQVFAMTGGGPNNA
D39V PTEITEAARIDGATSKQVFWNIELPYLLPSVSIVFILALKGGLTAFDQVFAMTGGGPNNA
Hungary19A-6 PTEITEAARIDGATSKQVFWNIELPYLLPSVSIVFILALKGGLTAFDQVFAMTGGGPNNA
EF3030 PTEITEAARIDGATSKQVFWNIELPYLLPSVSMVFILALKGGLTAFDQVFAMTGGGPNNA
********************************:***************************
TIGR4 TTSLGLLVYNYAFKNNQFGYANAIAVILFFLIVVISIIQLRVSKKFEI
D39 TTSLGLLVYNYAFKNNQFGYANAIAVILFFLIVVISIIQLRVSKKFEI
D39V TTSLGLLVYNYAFKNNQFGYANAIAVILFFLIVVISIIQLRVSKKFEI
Hungary19A-6 TTSLGLLVYNYAFKNNQFGYANAIAVILFFLIVVISIIQLRVSKKFEI
EF3030 TTSLGLLVYNYAFKNNQFGYANAIAVILFFLIVVISIIQLRVSKKFEI
************************************************