PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN003434000
• symbol^?: rumA-2
• synonym: rlmD
• description^?: 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD

  descriptions from strain specific annotations:

  • 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  • putative RNA methyltransferase
  • 23S rRNA (uracil-5-)-methyltransferase RumA
  • RNA methyltransferase, TrmA family
  • 23S rRNA (uracil-C(5))-methyltransferase RlmCD
  • RNA methyltransferase
  • 23S rRNA (uracil-5-)-methyltransferase
  • Conserved hypothetical protein
  • SAM-dependent methyltransferase
  • pseudogene
• strand^?: -
• coordinates^?: 4382290..4382290
• occurrence^?: in 100% of 41 strains

⊟Orthologs

TIGR4:
SP_RS09555 (rlmD)
D39:
SPD_RS09075 (rlmD)
D39V:
SPV_RS09070 (rlmD)
Hungary19A-6:
SPH_RS09980 (rlmD)
EF3030:
EF3030_RS09250 (rlmD)
670-6B:
SP670_RS09960 (rlmD)
6A-10:
HKM25_RS09580 (rlmD)
70585:
SP70585_RS09850 (rlmD)
A026:
T308_RS08950 (rlmD)
A66:
A66_RS08575 (rlmD)
AP200:
SPAP_RS09510 (rlmD)
ASP0581:
EL334_RS09750 (rlmD)
ATCC 49619:
EL263_RS09330 (rlmD)
ATCC 700669:
SPN23F_RS09805 (rlmD)
BVJ1JL:
JN057_RS09290 (rlmD)
CGSP14:
SPCG_RS09830 (rlmD)
G54:
SPG_RS09060 (rlmD)
gamPNI0373:
HMPREF1038_RS09290 (rlmD)
HU-OH:
EL271_RS09340 (rlmD)
Hu15:
SPNHU15_RS09075 (rlmD)
Hu17:
SPNHU17_RS09060 (rlmD)
INV104:
INV104_RS09520 (rlmD)
INV200:
SPNINV200_RS09245 (rlmD)
JJA:
SPJ_RS09110 (rlmD)
MDRSPN001:
MDRSPN_RS08745 (rlmD)
NCTC7466:
DQM66_RS09070 (rlmD)
NU83127:
EL277_RS09745 (rlmD)
OXC141:
SPNOXC_RS09175 (rlmD)
P1031:
SPP_RS09515 (rlmD)
R6:
SPR_RS08650 (rlmD)
SP49:
BMJ42_RS10185 (rlmD)
SPN032672:
SPN032672_RS06340 (rlmD)
SPN034156:
SPN034156_RS04150 (rlmD)
SPN034183:
SPN034183_RS09195 (rlmD)
SPN994038:
SPN994038_RS09100 (rlmD)
SPN994039:
SPN994039_RS09105 (rlmD)
SPNA45:
SPNA45_RS02000 (rlmD)
ST556:
MYY_RS09390 (rlmD)
Taiwan19F-14:
SPT_RS09190 (rlmD)
TCH8431/19A:
HMPREF0837_RS10325 (rlmD)
Xen35:
CXP32_RS09645 (rlmD)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MNLKVKQKIPLKIKRMGINGEGIGFYQKTLVFVPGALKGEDIYCQITSIRRNFVEAKLLK
  D39             MNLKVKQKIPLKIKRMGINGEGIGFYQKTLVFVPGALKGEDIYCQITSIRRNFVEAKLLK
  D39V            MNLKVKQKIPLKIKRMGINGEGIGFYQKTLVFVPGALKGEDIYCQITSIRRNFVEAKLLK
  EF3030          MNLKVKQKIPLKIKRMGINGEGIGFYQKTLVFVPGALKGEDIYCQITSIRRNFVEAKLLK
                  ************************************************************
  
  TIGR4           VNKKSKFRIVPSCTIYNECGGCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPT
  D39             VNKKSKFRIVPSCTIYNECGGCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPT
  D39V            VNKKSKFRIVPSCTIYNECGGCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPT
  EF3030          VNKKSKFRIVPSCTIYNECGGCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPT
                  ************************************************************
  
  TIGR4           IGMQEPKYYRAKLQFQTRKFKNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELL
  D39             IGMQEPKYYRAKLQFQTRKFKNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELL
  D39V            IGMQEPKYYRAKLQFQTRKFKNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELL
  EF3030          IGMQEPKYYRAKLQFQTRKFKNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELL
                  ************************************************************
  
  TIGR4           TYHQIPITDERKVLGVRTIMVRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVA
  D39             TYHQIPITDERKVLGVRTIMVRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVA
  D39V            TYHQIPITDERKVLGVRTIMVRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVA
  EF3030          TYHQIPITDERKVLGVRTIMVRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVA
                  ************************************************************
  
  TIGR4           VNTNTAKTSEIYGEKTEIIWGQESIQEGVLNYEFSLSPRAFYQLNPEQTEVLYSEAVKAL
  D39             VNTNTAKTSEIYGEKTEIIWGQESIQEGVLNYEFSLSPRAFYQLNPEQTEVLYSEAVKAL
  D39V            VNTNTAKTSEIYGEKTEIIWGQESIQEGVLNYEFSLSPRAFYQLNPEQTEVLYSEAVKAL
  EF3030          VNTNTAKTSEIYGEKTEIIWGQESIQEGVLNYEFSLSPRAFYQLNPEQTEVLYSEAVKAL
                  ************************************************************
  
  TIGR4           DVDKEDHLIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGT
  D39             DVDKEDHLIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGT
  D39V            DVDKEDHLIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGT
  EF3030          DVDKENHLIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGT
                  *****:******************************************************
  
  TIGR4           AEEIIPRWYKEGYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRL
  D39             AEEIIPRWYKEGYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRL
  D39V            AEEIIPRWYKEGYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRL
  EF3030          AEEIIPRWYKEGYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRL
                  ************************************************************
  
  TIGR4           VEVYDLHYIQSVDMFPHTARTEAVVKLIKKV
  D39             VEVYDLHYIQSVDMFPHTARTEAVVKLIKKV
  D39V            VEVYDLHYIQSVDMFPHTARTEAVVKLIKKV
  EF3030          VEVYDLHYIQSVDMFPHTARTEAVVKLIKKV
                  *******************************