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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003590000
- symbol?: yjfA
- synonym:
- description?: TrmH family RNA methyltransferase
- TrmH family RNA methyltransferase
- spoU rRNA Methylase family protein
- RNA methyltransferase
- Possible rRNA/tRNA methylase
- putative rRNA/tRNA methylase
- Putative TrmH family tRNA/rRNA
- rRNA methylase
- Putative TrmH family tRNA/rRNA methyltransferase
- RNA 2'-O ribose methyltransferase substrate binding family protein
- RNA methyltransferase, TrmH family
- SpoU rRNA Methylase family protein (pseudogene)
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4716975..4717715
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MTIITSKANSVVKNTKKLHQKKYRKSAYLIEGWHLFEEAVQAGVTIEKIFTLENYRDQLA
D39 MTIITSKANSVVKNAKKLHQKKYRKSAYLIEGWHLFEEAVQAGVTIEKIFALENYRDQLA
D39V MTIITSKANSVVKNAKKLHQKKYRKSAYLIEGWHLFEEAVQAGVTIEKIFALENYRDQLA
Hungary19A-6 MTIITSKANSVVKNAKKLHQKKYRKSAYLIEGWHLFEEAVQAGVTIEKIFALENYRDQLA
EF3030 MTIITSKANSVVKNAKKLHQKKYRKSAYLIEGWHLFEEAVQAGVTIEKIFALENYRNQLA
**************:***********************************:*****:***
TIGR4 TFSQTVWVSEDILLDLADSQTPQGIVAVVQKEEVGQADLSQGKFLFLEDVQDPGNVGTII
D39 AFPQTVWISEDILLDLADSQTPQGIVAVVQKEEVGQADLSQGKFLFLEDVQDPGNVGTII
D39V AFPQTVWISEDILLDLADSQTPQGIVAVVQKEEVGQADLSQGKFLFLEDVQDPGNVGTII
Hungary19A-6 AFPQTVWISEDILLDLADSQTPQGIVAVVQKEEVGQADLSQGKFLFLEDVQDPGNVGTII
EF3030 AFPQTVWISEDILLDLADSQTPQGIVAVVQKEEVGQADLSQGKFLFLEDVQDPGNVGTII
:*.****:****************************************************
TIGR4 RTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLAT
D39 RTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSPALLDETKKVAIPVLAT
D39V RTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSPALLDETKKVAIPVLAT
Hungary19A-6 RTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLAT
EF3030 RTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLAT
******************************************* ****************
TIGR4 TLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGI
D39 TLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGI
D39V TLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGI
Hungary19A-6 TLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGI
EF3030 TLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVATGI
*********************************************************:**
TIGR4 LIFHLS
D39 LIFHLS
D39V LIFHLS
Hungary19A-6 LIFHLS
EF3030 LIFHLS
******