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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003684000
- symbol?: —
- synonym:
- description?: transporter
- transporter
- putative Major Facilitator Superfamily protein
- transporter, major facilitator family
- Macrolide-efflux protein
- putative membrane protein
- conserved hypothetical protein
- major facilitator superfamily permease
- membrane protein, putative
- MFS transporter
- Dsg
- major Facilitator Superfamily protein
- transporter, major facilitator family protein
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4714015..4715244
- occurrence?: in 100% of 41 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKLLFRNPAYRILTLSRFFNAFGVSIFNLVFIVYASTLSQASFAVAMANIVMILPTLFTV
D39 MKLLFRNPAYRILTLSRFFNAFGASIFNLVFIVYASTLSQASFAVAMANIVMLLPTLFTV
D39V MKLLFRNPAYRILTLSRFFNAFGASIFNLVFIVYASTLSQASFAVAMANIVMLLPTLFTV
Hungary19A-6 MKLLFRNPAYRILTLSRFFNAFGASIFNLVFIVYASTLSQASFAVAMANIVMILPTFFTV
EF3030 MKLLFRNPAYRILTLSRFFNAFGASIFNLVFIVYASTLSQASFAVAMANIVMILPTLFTV
***********************.****************************:***:***
TIGR4 FAGIRADYTRDKVKWMVYSGLFQAVLFFLAALVVQQASLFAFSSLCLINVISDIISDFAG
D39 FAGIRADYTRAKVKWMVYSGLFQAVLFFLAALVVQQASLFAFSSLCLINVISDIISDFAG
D39V FAGIRADYTRAKVKWMVYSGLFQAVLFFLAALVVQQASLFAFSSLCLINVISDIISDFAG
Hungary19A-6 FAGIRADYTRDKVKWMVYSGLFQAVLFFLAALVVQQASLFAFSSLCLINVISDIISDFAG
EF3030 FVGIRADYTRDKVKWMVYSGLFQAVLFFLAALVVQQASLFAFSSLCLINVISDVISDFAG
*.******** ******************************************:******
TIGR4 GLRMPLIKEKVAEDDLMEAYSFSQFITYISAIGGQAFGVWLLALSVNNFSLVAGINACFF
D39 GLRMPLIKEKVAEDDLMEAYSFSQFITYISAIGGQAFGVWLLALSVNNFSLVAGINACFF
D39V GLRMPLIKEKVAEDDLMEAYSFSQFITYISAIGGQAFGVWLLALSVNNFSLVAGINACFF
Hungary19A-6 GLRMPLIKEKVAEDDLMEAYSFSQFITYISAIGGQAFGVWLLALSVNNFSLVAGINACFF
EF3030 GLRMPLIKEKVAEDDLMEAYSFSQFITYISAIGGQAFGVWLLALSVNNFSLVAGINACFF
************************************************************
TIGR4 LVSATILFLGKSKLSLSMSSADGENLKNEKLSIKDQFLTIYRNLRLVFLKSGQKNFGFML
D39 LVSATILFLGKSKLSLSMSSADGENLKNEKLSIKDQFLTIYRNLRLVFLKSGQKNFGFML
D39V LVSATILFLGKSKLSLSMSSADGENLKNEKLSIKDQFLTIYRNLRLVFLKSGQKNFGFML
Hungary19A-6 LVSATILFLGKSKLSLSMSSADGENLKNEKLSIKDQFLTIYRNLRLVFLKSRQKNFGFML
EF3030 LVSATILFLGKSKLSLSMSSADGENLKNEKLSIKDQFLTIYRNLRLVFLKSGQKNFGFML
*************************************************** ********
TIGR4 FAVLLINSLGGALGGIYNIFFLSHSLLNFSYTEALFINQFCVLVSVIISSLTGNDYFGKQ
D39 FAVLLINSLGGALGGIYNIFFLSHSLLNFSYTEALFINQFCVLVAIIISSLTGNDYFGKQ
D39V FAVLLINSLGGALGGIYNIFFLSHSLLNFSYTEALFINQFCVLVAIIISSLTGNDYFGKQ
Hungary19A-6 FAVLLINSLGGALGGIYNIFFLSHSLLNFSYTEALFINQVCVLLAIIISSLTGNDYFGKQ
EF3030 FAVLLINSLGGALGGIYNIFFLSHSLLNFSYTEALFINQFCVLVAIIISSLTGNDYFGKQ
***************************************.***:::**************
TIGR4 SLPRLMMWETVGLSLVGLANLFNQVVLGLLFLFFTLYVSGKVQPKISAMLMKNLAPEVLA
D39 SLPRLMMWATVGLSLVGLANLFNQVVLGLLFLFFTLYVSGKVQPKISAMLMKNLAPEVLA
D39V SLPRLMMWATVGLSLVGLANLFNQVVLGLLFLFFTLYVSGKVQPKISAMLMKNLAPEVLA
Hungary19A-6 SLPRLMMWETVGLSLVGLANLFNQVVLGLLFLFFTLYVSGKVQPKISAMLMKNLAPEVLA
EF3030 SLPRLMMWATVGLSLVGLANLFNQVVLGLLFLFFTLYVSGKVQPKISAMLMKNLAPEVLA
******** ***************************************************
TIGR4 RTSNFLGLLFTLSIPVGTACFSLVAVWNIQLTWMLFVGLSLLAIFLTILNLKNDI
D39 RTSNFLGLLFTLSIPVGTACFSLVAVWNIQLTWMLFVGLSLLAIFLTILNLKNDI
D39V RTSNFLGLLFTLSIPVGTACFSLVAVWNIQLTWMLFVGLSLLAIFLTILNLKNDI
Hungary19A-6 RTSNFLGLLFTLSIPVGTACFSLVAVWNIQLTWMLFVGFSLLAIFLTILNLKNDI
EF3030 HTSNFLGLLFTLSIPVGTACFSLVAVWNMQLTWMLFVGLSLLAIFLTILNLKNDI
:***************************:*********:****************