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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003753000
- symbol?: patB
- synonym:
- description?: multidrug efflux ABC transporter subunit PatB
- multidrug efflux ABC transporter subunit PatB
- ABC transporter, ATP-binding/permease protein
- ABC transporter ATP-binding membrane protein
- multidrug ABC transporter permease
- putative ABC transporter ATP-binding protein
- ABC transporter, ATP-binding protein
- ABC transporter ATP-binding protein/permease
- ABC transporter, permease/ATP-binding protein
- ABC transporter ATP-binding/membrane spanning protein - unknown substrate
- ABC transporter ATP-binding protein
- ABC transporter family protein
- ABC-type multidrug transport system, ATPase and permease component
- Lipid A export ATP-binding/permease protein MsbA
- Multidrug resistance ABC transporter ATP-binding and permease protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4799341..4801107
- occurrence?: in 100% of 41 strains
⊟Orthologs[edit | edit source]
SPN034156:
SPN034156_RS05155 (patB)
SPN034183:
SPN034183_RS10165 (patB)
SPN994038:
SPN994038_RS10075 (patB)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKTVQFFWHYFKVYKFSFVVVILMIVLATFAQALFPVFSGQAVTQLANLVQAYQNGNPEL
D39 MKTVQFFWHYFKVYKFSFVVVILMIVLATFAQSLFPVFSGQAVTQLANLVQAYQNGNPEL
D39V MKTVQFFWHYFKVYKFSFVVVILMIVLATFAQSLFPVFSGQAVTQLANLVQAYQNGNPEL
Hungary19A-6 MKTVQFFWHYFKVYKFSFVVVILMIVLATFAQALFPVFSGQAVTQLANLVQAYQNGNPEL
EF3030 MKTVQFFWHYFKVYKFSFVVVILMIVLATFAQALFPVFSGQAVTQLANLVQAYQNGNPEL
********************************:***************************
TIGR4 VWQSLSGIMVNLGLLVLVLFISSVIYMCLMTRVIAESTNEMRKGLFGKLAQLTVSFFDRR
D39 VWQSLSGIMVNLGLLVLVLFISSVIYMCLMTRVIAESTNEMRKGLFGKLAQLTVSFFDRR
D39V VWQSLSGIMVNLGLLVLVLFISSVIYMCLMTRVIAESTNEMRKGLFGKLAQLTVSFFDRR
Hungary19A-6 IWQSLSGIMVNLGLLVLVLFISSVIYMCLMTRVIAESTNEMRKGLFGKLAQLTVSFFDRR
EF3030 VWQSLSGIMVNLGLLVLVLFISSVIYMCLMTRVIAESTNEMRKGLFGKLAQLTVSFFDRR
:***********************************************************
TIGR4 QDGDILSHFTSDLDNILQAFNESLIQVMSNIVLYIGLILVMFSRNVTLALITIASTPLAF
D39 QDGDILSHFTSDLDNILQAFNESLIQVMSNIVLYIGLILVMFSRNVTLALITIASTPLAF
D39V QDGDILSHFTSDLDNILQAFNESLIQVMSNIVLYIGLILVMFSRNVTLALITIASTPLAF
Hungary19A-6 QDGDILSHFTSDLDNILQAFNESLIQVMSNIVLYIGLILVMFSRNVTLALITIASTPLAF
EF3030 QDGDILSHFTSDLDNILQAFNESLIQVMSNIVLYIGLILVMFSRNVTLALITIASTPLAF
************************************************************
TIGR4 LMLIFIVKMARKYTNLQQKEVGKLNAYMDESISGQKAVIVQGIQEDMMAGFLEQNERVRK
D39 LMLIFIVKMARKYTNLQQKEVGKLNAYMDESISGQKAVIVQGIQEDMMAGFLEQNERVRK
D39V LMLIFIVKMARKYTNLQQKEVGKLNAYMDESISGQKAVIVQGIQEDMMAGFLEQNERVRK
Hungary19A-6 LMLIFIVKMARKYTNLQQKEVGKLNAYMDESISGQKAVIVQGIQEDMMAGFLEQNERVRK
EF3030 LMLIFIVKMARKYTNLQQKEVGKLNAYMDESISGQKAVIVQGIQEDMMAGFLEQNERVRK
************************************************************
TIGR4 ATFKGRMFSGILFPVMNGMSLINTAIVIFAGSAVLLNDKSIETSTALGLIVMFAQFSQQY
D39 ATFKGRMFSGILFPVMNGMSLINTAIVIFAGSAVLLNDKSIETSTALGLIVMFAQFSQQY
D39V ATFKGRMFSGILFPVMNGMSLINTAIVIFAGSAVLLNDKSIETSTALGLIVMFAQFSQQY
Hungary19A-6 ATFKGRMFSGILFPVMNGMSLINTAIVIFAGSAVLLNDKSIETSTALGLIVMFAQFSQQY
EF3030 ATFKGRMFSGILFPVMNGMSLINTAIVIFAGSAVLLNDKSIETSTALGLIVMFAQFSQQY
************************************************************
TIGR4 YQPIIQVAASWGSLQLAFTGAERIQEMFDAEEEIRPEKAPTFTKLQESVEISHIVFSYLP
D39 YQPIIQVAASWGSLQLAFTGAERIQEMFDAEEEIRPEKAPTFTKLQESVEISHIDFSYLP
D39V YQPIIQVAASWGSLQLAFTGAERIQEMFDAEEEIRPEKAPTFTKLQESVEISHIDFSYLP
Hungary19A-6 YQPIIQVAASWGSLQLAFTGAERIQEMFDAEEEIRPEKAPTFTKLQESVEISHIDFSYLP
EF3030 YQPIIQVAASWGSLQLAFTGAERIQEMFDAEEEIRPEKAPTFTKLQESVEISHIDFSYLP
****************************************************** *****
TIGR4 DKPILKDVSISAPKGQMTAVVGPTGSGKTTIMNLINRFYDVDAGGIYFDGKDIRGYDLDS
D39 DKPILKDVSISAPKGQMTAVVGPTGSGKTTIMNLINRFYDVDAGGIYFDGKDIRGYDLDS
D39V DKPILKDVSISAPKGQMTAVVGPTGSGKTTIMNLINRFYDVDAGGIYFDGKDIRGYDLDS
Hungary19A-6 DKPILKDVSISAPKGQMTAVVGPTGSGKTTIMNLINRFYDVDAGGIYFDGKDIRGYDLDS
EF3030 DKPILKDVSISAPKGQMTAVVGPTGSGKTTIMNLINRFYDVDAGGIYFDGKDIRGYDLDS
************************************************************
TIGR4 LRSKVGIVLQDSVLFSGTIRDNIRFGVPDASQEMVEVAAKATHIHDYIESLPDKYDTLID
D39 LRSKVGIVLQDSVLFSGTIRDNIRFGVPDASQEMVEVAAKATHIHDYIESLPDKYDTLID
D39V LRSKVGIVLQDSVLFSGTIRDNIRFGVPDASQEMVEVAAKATHIHDYIESLPDKYDTLID
Hungary19A-6 LRSKVGIVLQDSVLFSGTIRDNIRFGVSDASQEMVEVAAKATHIHDYIESLPDKYDTLID
EF3030 LRSKVGIVLQDSVLFSGTIRDNIRFGVPDANQEMVEVAAKATHIHDYIESLPDKYDTLID
***************************.**.*****************************
TIGR4 DDQSIFSTGQKQLISIARTLMTDPEVLILDEATSNVDTVTESKIQHAMEVVVAGRTSFVI
D39 DDQSIFSAGQKQLISIARTLMTDPEVLILDEATSNVDTVTESKIQHAMEVVVAGRTSFVI
D39V DDQSIFSAGQKQLISIARTLMTDPEVLILDEATSNVDTVTESKIQHAMEVVVAGRTSFVI
Hungary19A-6 DDQSIFSTGQKQLISIARTLMTDPEVLILDEATSNVDTVTESKIQHAMEVVVAGRTSFVI
EF3030 DDQSIFSTGQKQLISIARTLMTDPEVLILDEATSNVDTVTESKIQHAMEVVVAGRTSFVI
*******:****************************************************
TIGR4 AHRLKTILNADQIIVLKDGEVIERGNHHELLKLGGFYSELYHNQFVFE
D39 AHRLKTILNADQIIVLKDGEVIERGNHHELLKLGGFYSELYHNQFVFE
D39V AHRLKTILNADQIIVLKDGEVIERGNHHELLKLGGFYSELYHNQFVFE
Hungary19A-6 AHRLKTILNADQIIVLKDGEVIERGNHHELLKLGGFYSELYHNQFVFK
EF3030 AHRLKTILNADQIIVLKDGEVIERGNHHELLKLGGFYSELYHNQFVFE
***********************************************: