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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003766000
- symbol?: pbp1b
- synonym:
- description?: penicillin-binding protein PBP1B
- penicillin-binding protein PBP1B
- penicillin-binding protein 1B
- Penicillin-binding protein 1F
- transglycosylase
- penicillin-binding protein
- Biosynthetic peptidoglycan transglycosylase
- Membrane carboxypeptidase (penicillin-binding protein)
- Multimodular transpeptidase-transglycosylase
- Multimodular transpeptidase-transglycosylase, penicillin-binding protein 1B
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4913324..4915815
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
(12F)
ASP0581:
EL334_RS10945 (pbp1b)
(19F)
ATCC 49619:
EL263_RS10490 (pbp1b)
(23F)
ATCC 700669:
SPN23F_RS10935 (pbp1b)
(19F)
G54:
SPG_RS10180 (pbp1b)
(1)
gamPNI0373:
HMPREF1038_RS10370 (pbp1b)
(3)
HU-OH:
EL271_RS10480 (pbp1b)
(19A)
Hu15:
SPNHU15_RS10105 (pbp1b)
(19A)
Hu17:
SPNHU17_RS10095 (pbp1b)
(1)
INV104:
INV104_RS10615 (pbp1b)
(14)
INV200:
SPNINV200_RS10360 (pbp1b)
(14)
JJA:
SPJ_RS10515 (pbp1b)
(19F)
MDRSPN001:
MDRSPN_RS10040 (pbp1b)
(1)
NCTC7465:
AT689_RS03375 (pbp1b)
(2)
NCTC7466:
DQM66_RS10190 (pbp1b)
(4)
NU83127:
EL277_RS10890 (pbp1b)
(19A)
SP49:
BMJ42_RS11460 (pbp1b)
(1)
SPN032672:
SPN032672_RS05230 (pbp1b)
(3)
SPN034156:
SPN034156_RS05275 (pbp1b)
(3)
SPN034183:
SPN034183_RS10285 (pbp1b)
(3)
SPN994038:
SPN994038_RS10195 (pbp1b)
(3)
SPN994039:
SPN994039_RS10200 (pbp1b)
(3)
SPNA45:
SPNA45_RS00630 (pbp1b)
(19F)
ST556:
MYY_RS10645 (pbp1b)
(19F)
Taiwan19F-14:
SPT_RS10440 (pbp1b)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MQNQLNELKRKMLEFFQQKQKNKKSARPGKKGSSTKKSKTLDKSVIFPAILLSIKALFNL
D39 MQNQLNELKRKMLEFFQQKQKNKKSARPGKKGSSTKKSKTLDKSAIFPAILLSIKALFNL
D39V MQNQLNELKRKMLEFFQQKQKNKKSARPGKKGSSTKKSKTLDKSAIFPAILLSIKALFNL
Hungary19A-6 MQNQLNELKRKMLEFFQQKQKNKKSARPGKKGSSTKKSKTLDKSAIFPAILLSIKALFNL
EF3030 MQNQLNELKRKMLEFFQQKQKNKKSARPGKKGSSTKKSKTLDKSAIFPAILLSIKALFNL
********************************************.***************
TIGR4 LFVLGFLGGMLGAGIALGYGVALFDKVRVPQTEELVNQVKDISSISEITYSDGTVIASIE
D39 LFVLGFLGGMLGAGIALGYGVALFDKVRVPQTEELVNQVKDISSISEITYSDGTVIASIE
D39V LFVLGFLGGMLGAGIALGYGVALFDKVRVPQTEELVNQVKDISSISEITYSDGTVIASIE
Hungary19A-6 LFVLGFLGGMLGVGIALGYGVALFDKVRVPQTEELVNQVKDISSISEITYSDGTVIASIE
EF3030 LFVLGFLGGMLGAGIALGYGVALFDKVRVSQTEELVNQVKDISSISEITYSDGTVIASIE
************.****************.******************************
TIGR4 SDLLRTSISSEQISENLKKAIIATEDEHFKEHKGVVPKAVIRATLGKFVGLGSSSGGSTL
D39 SDLLRTSISSEQISENLKKAIIATEDEHFKEHKGVVPKAVIRATLGKFVGLGSSSGGSTL
D39V SDLLRTSISSEQISENLKKAIIATEDEHFKEHKGVVPKAVIRATLGKFVGLGSSSGGSTL
Hungary19A-6 SDLLRTSISSEQISENLKKAIIATEDEHFKEHKGVVPKAVIRATLGKFVGLGSSSGGSTL
EF3030 SDLLRTSISSEQISENLKKAIIATEDEHFKEHKGVVPKAVIRATLGKFVGLGSSSGGSTL
************************************************************
TIGR4 TQQLIKQQVVGDAPTLARKAAEIVDALALERAMNKDEILTTYLNVAPFGRNNKGQNIAGA
D39 TQQLIKQQVVGDAPTLARKAAEIVDALALERAMNKDEILTTYLNVAPFGRNNKGQNIAGA
D39V TQQLIKQQVVGDAPTLARKAAEIVDALALERAMNKDEILTTYLNVAPFGRNNKGQNIAGA
Hungary19A-6 TQQLIKQQVVGDAPTLARKAAEIVDALALERAMNKDEILTTYLNVAPFGRNNKGQNIAGA
EF3030 TQQLIKQQVVGDAPTLARKAAEIVDALALERAMNKDEILTTYLNVAPFGRNNKGQNIAGA
************************************************************
TIGR4 RQAAEGIFGVDASQLTVPQAAFLAGLPQSPITYSPYENTGELKSDEDLEIGLRRAKAVLY
D39 RQAAEGIFGVDASQLTVPQAAFLAGLPQSPITYSPYENTGELKSDEDLEIGLRRAKAVLY
D39V RQAAEGIFGVDASQLTVPQAAFLAGLPQSPITYSPYENTGELKSDEDLEIGLRRAKAVLY
Hungary19A-6 RQAAEGIFGVDASQLTVPQAAFLAGLPQSPITYSPYENTGELKSDEDLEIGLRRAKAVLY
EF3030 RQAAEGIFGVDASQLTVPQAAFLAGLPQSPITYSPYENTGELKSDEDLEIGLRRAKAVLY
************************************************************
TIGR4 SMYRTGALSKDEYSQYKDYDLKQDFLPSGTVTGISRDYLYFTTLAEAQERMYDYLAQRDN
D39 SMYRTGALSKDEYSQYKDYDLKQDFLPSGTVTGISRDYLYFTTLAEAQERMYDYLAQRDN
D39V SMYRTGALSKDEYSQYKDYDLKQDFLPSGTVTGISRDYLYFTTLAEAQERMYDYLAQRDN
Hungary19A-6 SMYRTGALSKDEYSQYKDYDLKQDFLPSGTVTGISRDYLYFTTLAEAQERMYDYLAQRDN
EF3030 SMYRTGALSKDEYSQYKDYDLKQDFLPSGTVTGISRDYLYFTTLAEAQERMYDYLAQRDN
************************************************************
TIGR4 VSAKELKNEATQKFYRDLAAKEIENGGYKITTTIDQKIHSAMQSAVADYGYLLDDGTGRV
D39 VSAKELKNEATQKFYRDLAAKEIENGGYKITTTIDQKIHSAMQSAVADYGYLLDDGTGRV
D39V VSAKELKNEATQKFYRDLAAKEIENGGYKITTTIDQKIHSAMQSAVADYGYLLDDGTGRV
Hungary19A-6 VSAKELKNEATQKFYRDLAAKEIENGGYKITTTIDQKIHSAMQSAVADYGYLLDDGTGRV
EF3030 VSAKELKNEATQKFYRDLAAKEIENGGYKITTTIDQKIHSAMQSAVADYGYLLDDGTGRV
************************************************************
TIGR4 EVGNVLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSE
D39 EVGNVLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSE
D39V EVGNVLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSE
Hungary19A-6 EVGNVLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSE
EF3030 EVGNVLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSE
************************************************************
TIGR4 TILSNYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYWTYRMLREKGVDVKGYME
D39 TILSNYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYWTYRMLRENGVDVKGYME
D39V TILSNYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYWTYRMLRENGVDVKGYME
Hungary19A-6 TILSNYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYWTYRMLRENGVDVKGYME
EF3030 TILSNYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYWTYRMLRENGVDVKGYME
**************************************************:*********
TIGR4 KMGYEIPEYGIESLPMGGGIEVTVAQHTNGYQTLANNGVYHQKHVISKIEAADGRVVYEY
D39 KMGYEIPEYGIESLPMGGGIEVTVAQHTNGYQTLANNGVYHQKHVISKIEAADGRVVYEY
D39V KMGYEIPEYGIESLPMGGGIEVTVAQHTNGYQTLANNGVYHQKHVISKIEAADGRVVYEY
Hungary19A-6 KMGYEIPEYGIESLPMGGGIEVTVAQHTNGYQTLANNGVYHQKHVIAKIEAADGRVVYEY
EF3030 KMGYEIPEYGIESLPMGGGIEVTVAQHTNGYQTLANNGVYHQKHVISKIEAADGRVVYEY
**********************************************:*************
TIGR4 QDKPVQVYSKATATIMQGLLREVLSSRVTTTFKSNLTSLNPTLANADWIGKTGTTNQDEN
D39 QDKPVQVYSKATATIMQGLLREVLSSRVTTTFKSNLTSLNPTLANADWIGKTGTTNQDEN
D39V QDKPVQVYSKATATIMQGLLREVLSSRVTTTFKSNLTSLNPTLANADWIGKTGTTNQDEN
Hungary19A-6 QDKPVQVYSKATATIMQGLLREVLSSRVTTTFKSNLTSLNPTLANADWIGKTGTTNQDEN
EF3030 QDKPIQVYSKATATIMQGLLREVLSSRVTTTFKSNLTSLNPTLANADWIGKTGTTNQDEN
****:*******************************************************
TIGR4 MWLMLSTPRLTLGGWIGHDDNHSLSRRAGYSNNSNYMAHLVNAIQQASPSIWGNERFALD
D39 MWLMLSTPRLTLGGWIGHDDNHSLSRRAGYSNNSNYMAHLVNAIQQASPSIWGNERFALD
D39V MWLMLSTPRLTLGGWIGHDDNHSLSRRAGYSNNSNYMAHLVNAIQQASPSIWGNERFALD
Hungary19A-6 MWLMLSTPRLTLGGWIGHDDNHSLSRRAGYSNNSNYMAHLVNAIQQASPSIWGNERFALD
EF3030 MWLMLSTPRLTLGGWIGHDDNHSLSRRAGYSNNSNYMAHLVNAIQQASPSIWGNERFALD
************************************************************
TIGR4 PSVVKSEVLKSTGQKPEKVSVEGKEVEVTGSTVTSYWANKSGAPATSYRFAIGGSDADYQ
D39 PSVVKSEVLKSTGQKPGKVSVEGKEVEVTGSTVTSYWANKSGAPATSYRFAIGGSDADYQ
D39V PSVVKSEVLKSTGQKPGKVSVEGKEVEVTGSTVTSYWANKSGAPATSYRFAIGGSDADYQ
Hungary19A-6 PSVVKSEVLKSTGQKPGKVSVEGKEVEVTGSTVTSYWANKSGAPATSYRFAIGGSDADYQ
EF3030 PSVVKSEVLKSTGQKPGKVSVEGKEVEVTGSTVTSYWANKAGAPATSYRFAIGGSDADYQ
**************** ***********************:*******************
TIGR4 NAWSSIVGSLPTPSSSSSSSSSSSDSSNSSTTRPSSSRARR
D39 NAWSSIVGSLPTPSSSSSSSSSSSDSSNSSTTRPSSSRARR
D39V NAWSSIVGSLPTPSSSSSSSSSSSDSSNSSTTRPSSSRARR
Hungary19A-6 NAWSSIVGSLPTPSSSSSSSSSSSDSSNSSTTRPSSSRARR
EF3030 NAWSSIVGSLPTPSSFSSSSSSSSDSSNSSTTRP-SSRARR
*************** ****************** ******