Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003800000
- symbol?: gph_3
- synonym:
- description?: HAD family hydrolase
- HAD family hydrolase
- putative haloacid dehalogenase-like hydrolase
- hydrolase, haloacid dehalogenase-like family
- 5'-nucleotidase
- HAD-superfamily hydrolase, subfamily IA, variant 1
- putative phosphoglycolate phosphatase
- haloacid dehalogenase
- hydrolase, haloacid dehalogenase-like family protein
- conserved hypothetical protein, putative
- HAD hydrolase, family IA, variant 1
- HAD hydrolase, IA, variant 1 family protein
- HAD-superfamily hydrolase, subfamily IA, variant 1 family protein
- Phosphoglycolate phosphatase
- Predicted phosphatase
- putative haloacid dehalogenase-like hydrolase (pseudogene)
- putative phosphatase
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4866098..4866731
- occurrence?: in 100% of 41 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MQKTAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAED
D39 MQKTAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAED
D39V MQKTAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAED
Hungary19A-6 MQKTAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQNLLVRVAED
EF3030 MQKTAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAED
***************************************************:********
TIGR4 RNLDVEVLNQVRAQSLAEKNAQVVLMPGAREVLAWADESGIQQFIYTHKGNNAFTILKDL
D39 RNLDVEVLNQVRAQSLAEKNAQVVLMPGAREVLAWADESGIQQFIYTHKGNNAFTILKDL
D39V RNLDVEVLNQVRAQSLAEKNAQVVLMPGAREVLAWADESGIQQFIYTHKGNNAFTILKDL
Hungary19A-6 RNLDVEVLNQVRAQSLAEKNAQVVLMPGAREVLAWADESGIQQFIYTHKGNNAFTILKDL
EF3030 RNLDVEVLNQVRAQSLAEKNAQVVLMPGAREVLAWADESGIQQFIYTHKGNNAFTILKDL
************************************************************
TIGR4 GVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSGIQSI
D39 GVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSGIQSI
D39V GVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSGIQSI
Hungary19A-6 GVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSGIQSI
EF3030 GVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSGIQSI
************************************************************
TIGR4 NFLESTYEGNHRIQALADISRIFETK
D39 NFLESTYEGNHRIQALADISRIFETK
D39V NFLESTYEGNHRIQALADISRIFETK
Hungary19A-6 NFLESTYEGNHRIQALADISRIFETK
EF3030 NFLESTYEGNHRIQALADISRIFETK
**************************