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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003806000
- symbol?: comGA
- synonym:
- description?: competence type IV pilus ATPase ComGA
- competence type IV pilus ATPase ComGA
- competence protein CglA
- putative competence protein
- putative ABC transporter subunit ComYA
- ComG operon protein 1
- Competence protein
- type II/IV secretion system protein
- Late competence protein ComGA
- Late competence protein ComGA, access of DNA to ComEA
- type II/IV secretion system family protein
- Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4879017..4879958
- occurrence?: in 100% of 41 strains
⊟Orthologs[edit | edit source]
SPN034156:
SPN034156_RS04970 (comGA)
SPN034183:
SPN034183_RS09980 (comGA)
SPN994038:
SPN994038_RS09890 (comGA)
Taiwan19F-14:
SPT_RS10140 (comGA)
TCH8431/19A:
HMPREF0837_RS00260 (comGA)
Xen35:
CXP32_RS10515 (comGA)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MNYPKIDLKTIRQESKHFQADTPRLFLLYILPSMLVILSGFLNPLSRIHGTVLEQPFFSI
D39 MNYPKIDLKTIRQESKHFQADTPRLFLLYILPSMLVILSSFLNPLSRIHGTVLEQPFFSI
D39V MNYPKIDLKTIRQESKHFQADTPRLFLLYILPSMLVILSSFLNPLSRIHGTVLEQPFFSI
Hungary19A-6 MKYPKIDLKTVRQESKHFQADTPRLFLLYILPSMLVILSGFLNPLSRIHGTVLEQPFFSI
EF3030 MNYPKIDLKTIRQESKHFQADTPRLFLLYILPSMLVILSSFLNPLSRIHGTVLEQPFFSI
*:********:****************************.********************
TIGR4 LGQILQTYLFPLLVSFIGTILLTSSVYATLTLMKDSKTEPSVKNSLALFDEERFSQTFLT
D39 LGQILQAYLFPLLVSFIGTILLTSSVYATLTLMKDSKTEPSVKNSLALFDEERFSQTFLT
D39V LGQILQAYLFPLLVSFIGTILLTSSVYATLTLMKDSKTEPSVKNSLALFDEERFSQTFLT
Hungary19A-6 LGQILQAYLFPLLVSFIGTILLTSSVYATLTLMKDSKTEPSVKNSLALFDEERFSQTFLT
EF3030 LGQILQTYLFPLLVSFIGTILLTSSVYATLTLMKDSKTEPSVKNSLALFDEERFSQTFLT
******:*****************************************************
TIGR4 LLLKRFYLFLWSIPNLLGIYLLFYSSFLAKKFVTLHPEFPNLDLSSVETERFLMVFGLYF
D39 LLLKRFYLFLWSIPNLLGIYLLFYSSFLAKKFVTLHPEFPNLDLSSVETERFLMVFGLYF
D39V LLLKRFYLFLWSIPNLLGIYLLFYSSFLAKKFVTLHPEFPNLDLSSVETERFLMVFGLYF
Hungary19A-6 LLLKRFYLFLWSIPNLLGIYFLFYSSFLAKKFVTLHPEFPNLDLSSVETERFLMVFGLYF
EF3030 LLLKRFYLFLWSIPNLLGIYLLFYSSFLAKKFVTLHPEFPNLDLSSVETERFLMVFGLYF
********************:***************************************
TIGR4 LASLILIIVGNILYIPQYYAYSQVEFLLCYSLDLGQVPPRRILKTSRSFMKGYKFQHFVL
D39 LASLILIIVGNILYIPQYYAYSQVEFLLCYSLDLGQVPPRRILKTSRSFMKGYKFQRFVL
D39V LASLILIIVGNILYIPQYYAYSQVEFLLCYSLDLGQVPPRRILKTSRSFMKGYKFQRFVL
Hungary19A-6 LASLILIIVGNILYIPQYYAYSQVEFLLCYSLDLGQASPRRILKTSRSFMKGYKFQHFVL
EF3030 LASLILIIVGNILYIPQYYAYSQVEFLLCYSLDLGQVPPRRILKTSRSFMKGYKFQHFVL
************************************..******************:***
TIGR4 DLQLLPWYFLNWITFGIASFSLLPYIQCTKIMFYRAVLARKRPKA-------
D39 DLQLLPWYFLNWITFGIASFSLLPYIQCTKIMFYRAVLARKRPKA-------
D39V DLQLLPWYFLNWITFGIASFSLLPYIQCTKIMFYRAVLARKRPKA-------
Hungary19A-6 DLQLLPWYFLNWITFDIASFLLLPYIQCTKISFYRAVLRAALSKKYQLNYPW
EF3030 DLQLLPWYFLNWITFGIASFSLLPYIQCTKIMFYRAVLARKRPKA-------
***************.**** ********** ****** .*