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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003813000
- symbol?: comGB
- synonym:
- description?: type II secretion system F family protein
- type II secretion system F family protein
- competence protein CglB
- putative competence protein
- Competence protein
- Putative type II secretion system protein F
- bacterial type II secretion system domain protein F
- Late competence protein ComGB
- Late competence protein ComGB, access of DNA to ComEA
- type II secretion system (T2SS), F family protein
- Type II secretory pathway, component PulF
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4879906..4880922
- occurrence?: in 100% of 41 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MDISQVFRLRRKKLATAKQKNIITLFNNLFSSGFHLVETISFLDRSALLDKQCVTQMRVG
D39 MDISQVFRLRRKKLATAKQKNIITLFNNLFSSGFHLVETISFLDRSALLDKQCVTQMRVG
D39V MDISQVFRLRRKKLATAKQKNIITLFNNLFSSGFHLVETISFLDRSALLDKQCVTQMRVG
Hungary19A-6 MDISQVFRLRRKKLATAKQKNIITLFNNLFSSGFHLVETISFLDRSALLDKQCVIQMRAG
EF3030 MDISQVFRLRRKKLATAKQKNIITLFNNLFSSGFHLVETISFLDRSALLDKQCVTQMRTG
****************************************************** ***.*
TIGR4 LSQGKSFSEMMESLGCSSAIVTQLSLAEVHGNLHLSLGKIEEYLDNLAKVKKKLIEVATY
D39 LSQGKSFSEMMESLGCSSAIVTQLSLAEVHGNLHLSLGKIEEYLDNLAKVKKKLIEVATY
D39V LSQGKSFSEMMESLGCSSAIVTQLSLAEVHGNLHLSLGKIEEYLDNLAKVKKKLIEVATY
Hungary19A-6 LSQGKSFSEMMESLGCSSTIVTQLSLAEVHGNLHLSLGKIEEYLDNLAKVKKKLIEVATY
EF3030 LSQGKSFSEMMESLGCSSTIVTQLSLAEVHGNLHLSLGKIEEYLDNLAKVKKKLIEVATY
******************:*****************************************
TIGR4 PLILLGFLLLIMLGLRNYLLPQLDSSNIATQIIGNLPQIFLGMVGLVSVLALLALTFYKR
D39 PLILLGFLLLIMLGLRNYLLPQLDSSNIATQIIGNLPQIFLGMVGLVSVLALLALTFYKR
D39V PLILLGFLLLIMLGLRNYLLPQLDSSNIATQIIGNLPQIFLGMVGLVSVLALLALTFYKR
Hungary19A-6 PLILLGFLLLIMLGLRNYLLPQLDSSNIATQIIGNLPQIFLGMVGFVSILVLLALTFYKR
EF3030 PLILLGFLLLIMLGLRNYLLPQLDSSNIATRIIGNLPQIFLGMVGLVSVLALLALTFYKR
******************************:**************:**:*.*********
TIGR4 SSKMSVFSILARLPFIGIFVQTYLTAYYAREWGNMISQGMELTQIFQMMQEQGSQLFKEV
D39 SSKMSVFSILARLPFIGIFVQTYLTAYYAREWGNMISQGMELTQIFQMMQEQGSQLFKEV
D39V SSKMSVFSILARLPFIGIFVQTYLTAYYAREWGNMISQGMELTQIFQMMQEQGSQLFKEV
Hungary19A-6 SSKMRVFSILARLPLLGIFVRTYLTAYYAREWGNMISQGMELTQIFQMMQEQGSQLFKEI
EF3030 SSKMSVFSILARLPFIGIFVQTYLTAYYAREWGNMISQGMELTQIFQMMQEQGSQLFKEI
**** *********::****:**************************************:
TIGR4 GQDLAQTLKNGREFSQTIGTYPFFRKELSLIIEYGEVKSKLGSELEIYAEKTWEAFFTRV
D39 GQDLAQTLKNGREFSQTIGTYPFFRKELSLIIEYGEVKSKLGSELEIYAEKTWEAFFTRV
D39V GQDLAQTLKNGREFSQTIGTYPFFRKELSLIIEYGEVKSKLGSELEIYAEKTWEAFFTRV
Hungary19A-6 GQDLAQSLQSGREFSQTIATYPFFKKELSLIIEYGEVKSKLGSELEIYAEKTWEAFFTRV
EF3030 GQDLAQTLKNGREFSQTIGTYPFFRKELSLIIEYGEVKSKLGSELEIYAEKTWEAFFTRV
******:*:.********.*****:***********************************
TIGR4 NRTMNLVQPLVFIFVALIIVLLYAAMLMPMYQNMEVNF
D39 NRTMNLVQPLVFIFVALIIVLLYAAMLMPMYQNMEVNF
D39V NRTMNLVQPLVFIFVALIIVLLYAAMLMPMYQNMEVNF
Hungary19A-6 NRTMNLVQPLVFIFVALIIVLLYAAMLMPMYQNMEVNF
EF3030 NRTMNLVQPLVFIFVALIIVLLYAAMLMPMYQNMEVNF
**************************************