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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003825000
- symbol?: —
- synonym:
- description?: IS5 family transposase
- IS5 family transposase
- transposase family protein
- IS5/IS1182 family transposase
- transposase
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4991762..4992648
- occurrence?: in 67% of 43 strains
⊟Orthologs[edit | edit source]
(3)
SPN034183:
—
(3)
SPN994038:
—
(3)
SPN994039:
—
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKKTLTPTKESIDSLRNYEASKQLTDTRFKRLVGVQRTTFKEMLAVLKTAYQLKHAKGGR
D39 MDTYQRVNR--LPAKQNYEASKQLTDARFKRLVGVQRTTFEEMLAVLKTAYQLKHAKGGR
D39V MDTYQRVNR--LPAKQNYEASKQLTDARFKRLVGVQRTTFEEMLAVLKTAYQLKHAKGGR
EF3030 MKKTLTPTKESIDSLRNYEASKQLTDTRFKRLVGVQRTTFKEMLAVLKTAYQLKHAKGGR
*.. .: : : :**********:*************:*******************
TIGR4 KPKLSL------------EYRTYEEIAADFGIHESNLIRRSQWVEVTLVQSGVTISRTPL
D39 KPKLSLEDLLMATLQYVREYRTYEQIAADFGIHESNLIRRSQWVEVTLVQSGVTISRTPL
D39V KPKLSLEDLLMATLQYVREYRTYEQIAADFGIHESNLIRRSQWVEVTLVQSGVTISRTPL
EF3030 KPKLSLEDLLMATLQYVREYRTYEQIAAVFGIHESNFIRRSQWVEVTLVQSGVTISRTPL
****** ******:*** *******:***********************
TIGR4 SSEDTVM-IDATEVKINRPKKELANDSGKKKFHAMKAQAIVTSQGRIVSLDITVNYCHDM
D39 SSEDTVMIIDATEVKINRPKKELANNSGKKKFHAMKAQAIVTSQGRIVSLDIAVNYSHDM
D39V SSEDTVMIIDATEVKINRPKKELANNSGKKKFHAMKAQAIVTSQGRIVSLDIAVNYSHDM
EF3030 SSEDTVM-IDATEVKINRPKKELANDSGKKKCHAMKAQAIVTSQGRIVSLDITVNYCHDM
******* *****************:***** ********************:***.***
TIGR4 KLFKMSCRNIGQAGKILADSGYQGLMKICPQAQTSRKSSKLKPLTAEDKAYNHALSKERS
D39 KLFKMSRRNIEQAGKILADSGYQGLMKIYPQVQTPRKSSKLKPLTAENKAYNHALSKERS
D39V KLFKMSRRNIEQAGKILADSGYQGLMKIYPQVQTPRKSSKLKPLTAENKAYNHALSKERS
EF3030 KLFKMSRRNIGQAGKILADSGYQGPMKIYPQAQTPRKSSKLKPLIAEDKAYNHALSKERS
****** *** ************* *** **.**.********* **:************
TIGR4 KVENIFAKVKTFKMFSTTYRNHRKRFGLRMNLIAGIINHELGF
D39 KVENIFAKVKTFKIFSTTYRNHRKRFGLRMNLSAGIINHELGF
D39V KVENIFAKVKTFKIFSTTYRNHRKRFGLRMNLSAGIINHELGF
EF3030 KVENIFAKVKTFKIFSTTYRNHRKRFGLRMNLIAGIINHELGF
*************:****************** **********