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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003828000
- symbol?: gcnA
- synonym:
- description?: beta-N-acetylhexosaminidase
- beta-N-acetylhexosaminidase
- N-acetyl-beta-D-glucosaminidase
- glycosyl hydrolase-related protein
- family 20 glycosylhydrolase
- glycosyl hydrolase family 20 (GH20) protein
- putative glycosyl hydrolase
- putative viral phosphatase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4994009..4995889
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MVRFTGLSLKQTQAIEVLKGHISLPDVEVAVTQSDQASISIEGEEGHYQLTYRKPHQLYR
D39 MVRFTGLSPKQTQAIEVLKGHISLPDVEVAVTQSDQASISIQGEEGHYQLTYRKPHQLYR
D39V MVRFTGLSPKQTQAIEVLKGHISLPDVEVAVTQSDQASISIQGEEGHYQLTYRKPHQLYR
Hungary19A-6 MVRFTGLSPKQTQAIEVLKGHISLPDVEVAVTQSDQASISIEGEEGHYQLTYRKPHQLYR
EF3030 MVRFIGLSPKQTQAIEVLKGHISLPDVEVAVTQSDQASISIEGEEGHYQLTYRKPHQLYR
**** *** ********************************:******************
TIGR4 ALSLLVTVLAEADKVEIEEQAAYEDLAYMVDCSRNAVLNVASAKQMIEILALMGYSTFEL
D39 ALSLLVTVLAEADKVEIEEQAAYEDLAYMVDCSRNAVLNVASAKQMIEVLALMGYSTFEL
D39V ALSLLVTVLAEADKVEIEEQAAYEDLAYMVDCSRNAVLNVASAKQMIEVLALMGYSTFEL
Hungary19A-6 ALSLLVTVLAEADKVEIEEQAAYEDLAYMVDCSRNAVLNVASAKQMIEVLALMGYSTFEL
EF3030 ALSLLVTVLAEADKVEIEEQAAYEDLAYMVDCSRNAVLNVASAKQMIEVLALMGYSTFEL
************************************************:***********
TIGR4 YMEDTYQIEGQPYFGYFRGAYSAEELQEIEAYAQQFDVTFVPCIQTLAHLSAFVKWGVKE
D39 YMEDTYQIEGQPYFGYFRGAYSAEELQEIEAYAQQFDMTFVPCIQTLAHLSAFVKWGVKE
D39V YMEDTYQIEGQPYFGYFRGAYSAEELQEIEAYAQQFDMTFVPCIQTLAHLSAFVKWGVKE
Hungary19A-6 YMEDTYQIEGQPYFGYFRGAYSAEELQEIEAYAQQFDMTFVPCIQTLAHLSAFVKWSVKE
EF3030 YMEDTYQIEGQPYFGYFRGAYSAEELQEIEAYAQQFDMTFVPCIQTLAHLSAFVKWGVKE
*************************************:******************.***
TIGR4 VQELRDVEDILLIGEEKVYDLIDGMFATLSKLKTRKVNIGMDEAHLVGLGRYLILNGVVD
D39 VQELRDVEDILLIGEEKVYDLIDGMFATLSKLKTRKVNIGMDEAHLVGLGRYLILNGVVD
D39V VQELRDVEDILLIGEEKVYDLIDGMFATLSKLKTRKVNIGMDEAHLVGLGRYLILNGVVD
Hungary19A-6 VQELRDVEDILLIGEEKVYDLIDGMFATLSKLQTRKVNIGMDEAHLVGLGRYLILNGVVD
EF3030 VQELRDVEDILLIGEEKVYDLIDGMFATLSKLKTRRVNIGMDEAHLVGLGRYLILNGVVD
********************************:**:************************
TIGR4 RSLLMCQHLERVLDIADKYGFHCQMWSDMFFKLMSADGQYDRDVEIPEETRVYLDRLKDR
D39 RSLLMCQHLERVLDIADKYGFHCQMWSDMFFKLMSADGQYDRDVKIPEETRVYLDRLKDR
D39V RSLLMCQHLERVLDIADKYGFHCQMWSDMFFKLMSADGQYDRDVKIPEETRVYLDRLKDR
Hungary19A-6 RSLLMCQHLERVLDIADKYGFHCQMWSDMFFKLMSADGQYDRDVEIPEETRVYLDRLKDH
EF3030 RSLLMCQHLERVLDIADKYGFHCQMWSDMFFKLMSADGQYDRDVEIPEETRVYLDRLKDR
********************************************:**************:
TIGR4 VTLVYWDYYQDSEEKYNRNFRNHHKISHDLAFAGGAWKWIGFTPHNHFSRLVAIEANKAC
D39 VTLVYWDYYQDSEEKYNRNFRNHHKISHDLAFAGGAWKWIGFTPHNHFSRLVAIEANKAC
D39V VTLVYWDYYQDSEEKYNRNFRNHHKISHDLAFAGGAWKWIGFTPHNHFSRLVAIEANKAC
Hungary19A-6 VTLVYWDYYQDSEEKYNRNFRNHHKISHDLAFAGGAWKWIGFTPNNHFSRLVAIEANKAC
EF3030 VTLVYWDYYQDSEEKYNRNFRNHHKISHDLAFAGGAWKWIGFTPHNHFSRLVAIEANKAC
********************************************:***************
TIGR4 RANQIKEVIVTGWGDNGGETAQFSILPSLQIWAELSYRNDLDGLSAHFKTNTGLTVEDFM
D39 RANQIKEVIVTGWGDNGGETAQFSILPSLQIWAELSYRNDLDGLSAHFKTNTGLTVEDFM
D39V RANQIKEVIVTGWGDNGGETAQFSILPSLQIWAELSYRNDLDGLSAHFKTNTGLTVEDFM
Hungary19A-6 RANQIKEVIVTGWGDNGGETAQFSILPSLQIWAELSYRNDLDSLSAHFKTNTGLTVEDFM
EF3030 RANQIKEVIVTGWGDNGGETAQFSILPSLQIWAELSYRNDLDGLSAHFKTNTGLTVEDFM
******************************************.*****************
TIGR4 QIDLANLLPDLPGNLSGINPNRYVFYQDILCPILDQHMTPEQDKPHFAQAAETLANIKEK
D39 QIDLANLLPDLPGNLSGINPNRYVFYQDILCPILDQHMTPEQDKPHFAQAAETLANIKEK
D39V QIDLANLLPDLPGNLSGINPNRYVFYQDILCPILDQHMTPEQDKPHFAQAAETLANIKEK
Hungary19A-6 QIDLANLLPDLPGNLSGINPNRYVFYQDVLCPILDQHMTPEQDKPHFAQAAETLANIKEK
EF3030 QIDLANLLPDLPGNLSGINPNRYVFYQDILCPILDQHMTPEQDKPHFAQAAETLANIKEK
****************************:*******************************
TIGR4 AGNYAYLFETQAQLNAILSSKVDVGRRIRQAYQADDKESLQQIARQELPELRSQIEDFHA
D39 AGNYAYLFETQAQLNAILSSKVDVGRRIRQAYQADDKESLQQIARQELPELRSQIEDFHA
D39V AGNYAYLFETQAQLNAILSSKVDVGRRIRQAYQADDKESLQQIARQELPELRSQIEDFHA
Hungary19A-6 AGNYAYLFETQAQLNAILSSKVDVGRRIRQAYQADDKESLQQIARQELPELRSQIEDFHA
EF3030 AGNYAYLFETQAQLNAILSSKVDVGRRIRQAYQADDKESLQQIARQELPELRSQIEDFHA
************************************************************
TIGR4 LFSHQWLKENKVFGLDTVDIRMGGLLQRIKRAESRIEVYLAGQLDRIDELEVEILPFTDF
D39 LFSHQWLKENKVFGLDTVDIRMGGLLQRIKRAESRIEVYLAGQLDRIDELEVEILPFTDF
D39V LFSHQWLKENKVFGLDTVDIRMGGLLQRIKRAESRIEVYLAGQLDRIDELEVEILPFTDF
Hungary19A-6 LFSHQWLKENKVFGLDTVDIRMGGLLQRIKRAESRIEVYLAGQLDRIDELEVEILPFTNF
EF3030 LFSHQWLKENKVFGLDTVDIRMGGLLQRIKRAESRIEVYLAGQLDRIDELEVEILPFTDF
**********************************************************:*
TIGR4 YADKDFAATTANQWHTIATASTIYTT
D39 YADKDFAATTANQWHTIATASTIYTT
D39V YADKDFAATTANQWHTIATASTIYTT
Hungary19A-6 YADKDFAATTANQWHTIATASTIYTT
EF3030 YADKDFAATTANQWHTIATASTIYTT
**************************