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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003833000
- symbol?: fuc1
- synonym:
- description?: alpha-L-fucosidase
- alpha-L-fucosidase
- putative fucosidase
- FucA
- putative alpha-L-fucosidase 1 (Alpha-L-fucoside fucohydrolase)
- alpha-L-fucosidase (Alpha-L-fucosidefucohydrolase)
- alpha-L-fucosidase 1 domain protein
- conserved hypothetical protein
- F5/8 type C domain protein
- glycosyl hydrolase family 29 (alpha-L-fucosidase)
- Glycosyl hydrolase family 29 alpha-L-fucosidase
- putative alpha-L-fucosidase 1
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5003298..5004977
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKKIKPHGPLPSQTQLAYLGDELAAFIHFGPNTFYDQEWGTGQEDPERFNPSQLDAREWV
D39 MKKIKPHGPLPSQTQLAYLGDELAAFIHFGPNTFYDQEWGTGQEDPERFNPSQLDAREWV
D39V MKKIKPHGPLPSQTQLAYLGDELAAFIHFGPNTFYDQEWGTGQEDPERFNPSQLDAREWV
Hungary19A-6 MKKIKPHGPLPSQTQLAYLGDELAAFIHFGPNTFYDQEWGTGQEDPERFNPSQLDAREWV
EF3030 MKKIKPHGPLPSQTQLAYLGDELAAFIHFGPNTFYNQEWGTGQEDPERFNPSQLDAREWV
***********************************:************************
TIGR4 RVLKETGFKKLILVVKHHDGFVLYPTAHTDYSVKVSPWRRGKGDLLLEVSQAATEFDMDM
D39 RVLKETGFKKLILVVKHHDGFVLYPTAHTDYSVKVSPWRRGKGDLLLEVSQAATEFDMDM
D39V RVLKETGFKKLILVVKHHDGFVLYPTAHTDYSVKVSPWRRGKGDLLLEVSQAATEFDMDM
Hungary19A-6 RVLKETGFKKLILVVKHHDGFVLYPTAHTDYSVKVSPWRRGKGDLLLEVSQAATEFDMDM
EF3030 RVLKETGFKKLILVVKHHDGFVLYPTAHTDYSVKVSPWRRGEGDLLLEVSQAATEFDMDM
*****************************************:******************
TIGR4 GVYLSPWDAHSPLYHVDREADYNAYYLAQLKEILSNPNYGNAGKFAEVWMDGARGEGAQK
D39 GVYLSPWDAHSPLYHVDREADYNAYYLAQLKEILSNPNYGNAGKFAEVWMDGARGEGAQK
D39V GVYLSPWDAHSPLYHVDREADYNAYYLAQLKEILSNPNYGNAGKFAEVWMDGARGEGAQK
Hungary19A-6 GVYLSPWDAHSPLYHVDREADYNAYYLAQLKEILSNPNYGNAGKFAEVWMDGARGEGAQK
EF3030 GVYLSPWDAHSPLYHVDREADYNAYYLAQLKEILSNPNYGNAGKFAEVWMDGARGEGAQK
************************************************************
TIGR4 VNYEFEKWFETIRDLQGDCLIFSTEGTSIRWIGNERGYAGDPLWQKVNPDKLGTEAELNY
D39 VNYEFEKWFETIRDLQGDCLIFSTEGTSIRWIGNERGYAGDPLWQKVNLDKLGTEAELNY
D39V VNYEFEKWFETIRDLQGDCLIFSTEGTSIRWIGNERGYAGDPLWQKVNLDKLGTEAELNY
Hungary19A-6 VNYEFEKWFETIRDLQGACLIFSTEGTSIRWIGNERGYAGDPLWQKVNPDKLGTEAELNY
EF3030 VNYEFEKWFETIRDLQGDCLIFSTEGTSIHWIGNERGYAGDPLWQKMNPDKLGTEAELNY
***************** ***********:****************:* ***********
TIGR4 LQHGDPSGTIFSIGEADVSIRPGWFYHEDQDPKSLEELVEIYFHSVGRGTPLLLNIPPNQ
D39 LQHGDPSGTIFSIGEADVSIRPGWFYHEDQDPKSLEELVEIYFHSVGRGTPLLLNIPPNQ
D39V LQHGDPSGTIFSIGEADVSIRPGWFYHEDQDPKSLEELVEIYFHSVGRGTPLLLNIPPNQ
Hungary19A-6 LQHGDPSGTIFSIGEADVSIRPGWFYHEDQDPKSLEELVEIYFHSVGRGTPLLLNIPPNQ
EF3030 LQHGDPSGTIFSIGEADVSIRPGWFYHEDQDPKSLEELVEIYFHSVGRGTPLLLNIPPNQ
************************************************************
TIGR4 AGLFDAKDIERLYEFATYRNELYKEDLALGAEVSGPALSADFACRHLTDGLETSSWASDA
D39 AGLFDAKDIERLYEFATYRNELYKEDLALGAEVSGPALSADFDCRHLTDGLETSSWASDA
D39V AGLFDAKDIERLYEFATYRNELYKEDLALGAEVSGPALSADFDCRHLTDGLETSSWASDA
Hungary19A-6 AGLFDAKDIERLYEFATYRNELYKEDLALGAEVSGPALSADFACRHLTDGLETSSWANDA
EF3030 AGLFDAKDIERLYEFATYRNELYKEDLALGAEVSGPALSADFACRHLTDGLETSSWASDA
****************************************** **************.**
TIGR4 DLPIQLELDLGSPKTFDVIELREDLKLGQRIAAFHVQVEVDGVWQEFGSGHTVGYKRLLR
D39 DLPIQLELDLGSPKTFDVIELREDLKLGQRIAAFHVQVEVDGVWQEFGRGFTVGHKRLLR
D39V DLPIQLELDLGSPKTFDVIELREDLKLGQRIAAFHVQVEVDGVWQEFGRGFTVGHKRLLR
Hungary19A-6 DLPIQLELDLGSPKTFDVIELREDLKLGQRIAAFHVQVEVDGVWQEFGRGFTVGHKRLLR
EF3030 DLPIQLELDLGSPKTFDVIELREDLKLGQRIAAFHVQVEVDGVWQEFGRGFTVGHKRLLR
************************************************ *.***:*****
TIGR4 GAVVEAQKIRVVITESQALPLLTKISLYKTPGLSKKEVVQELAFAEKSLAVAKGENAYFT
D39 GPLVEAQKVRVMITEAQSIPVLTKISLYKTPGLSKKEVVQELAFAEKSLAVAKGETLHFR
D39V GPLVEAQKVRVMITEAQSIPVLTKISLYKTPGLSKKEVVQELAFAEKSLAVAKGETLHFR
Hungary19A-6 GPLVEAQKVRVMITEAQSIPVLTKISLYKTPGLSKKEVVQELAFAEKSLAVAKGETLHFR
EF3030 GPLVEAQKVRVMIIEAQSIPVLTKISLYKTPGLSKKEVVQELAFAEKSLAVAKGETLHFR
*.:*****:**:* *:*::*:**********************************. :*
TIGR4 VKRRECSGPLEAKISIQPGTGVHGVAYQDEIQVLAFQTGETEKSLTLPTLYFAGDKTLDF
D39 IERSESSSSLEAKISIQPGTGVHGVAYQDEIYALAFQAGETEKRLTLPTLYFAGDKTLDF
D39V IERSESSSSLEAKISIQPGTGVHGVAYQDEIYALAFQAGETEKRLTLPTLYFAGDKTLDF
Hungary19A-6 IERSESSSSLEAKISIQPGTGVHGVAYQDEIQVLAFQAGETEKSLTLPTLYFAGDKTLDF
EF3030 IERSESSSSLEAKISIQPGTGVHGVAYQDEIQVLAFQAGETEKRLTLPTLYFAGDKTLDF
::* *.*..********************** .****:***** ****************
TIGR4 YLNLTVDGQLVDQLQVQVS
D39 YLNLTVDGQLVDQLQVQVS
D39V YLNLTVDGQLVDQLQVQVS
Hungary19A-6 YLNLTVDGQLVDQLQVQVS
EF3030 YLNLTVDGQLVDQLQVQVS
*******************