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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003841000
- symbol?: pspC
- synonyms: cbpA, pbcA, spsA
- description?: pneumococcal surface protein PspC, choline-binding form
- pneumococcal surface protein PspC, choline-binding form
- choline binding protein A
- choline-binding protein CbpA
- choline-binding surface protein A
- Putative endo-beta-N-acetylglucosaminidase
- surface protein PspC
- choline binding protein J
- Gram-positive signal peptide protein, YSIRK family
- RICH domain-containing protein
- SigA binding protein
- YSIRK-type signal peptide-containing protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4984318..5104222
- occurrence?: in 76% of 41 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MFASKSERKVHYSIRKFSVGVASVVVASLVMGSVVHATE-NEGATQVPTSSNRANESQAE
D39 MFASKSERKVHYSIRKFSIGVASVAVASLVMGSVVHATE-NEGSTQAATSSNMAKTEH--
D39V MFASKSERKVHYSIRKFSIGVASVAVASLVMGSVVHATE-NEGSTQAATSSNMAKTEH--
Hungary19A-6 MFASKSERKVHYSIRKFSIGVASVVVASLFLGGVVHAEGVRSGDTPKVTSSG--------
EF3030 MFASKSERKVHYSIRKFSIGVASVAVASLFLGGVVHAEGVRSENTPKVTSSG--------
******************:*****.****.:*.**** .. * ***.
TIGR4 QGEQPKKLDSERDKARKEVEEYVKKIVGESYAKSTKKRHTITVALVNELNNIKNEYLNKI
D39 -----------RKAAKQVVDEYIEKMLREI--QLDRRKHTQNVALNIKLSAIKTKYLREL
D39V -----------RKAAKQVVDEYIEKMLREI--QLDRRKHTQNVALNIKLSAIKTKYLREL
Hungary19A-6 ----------------DEVESHLKKILSEIQTQLDRKRHAKTVALINKLQDIKRTYSYKL
EF3030 ----------------DEVDEYIKKMLSEI--QLDKRKHTHNFALNLKLSRIKTEYLYKL
. *:.:::*:: * : :::*: ..** :*. ** * ::
TIGR4 -VESTSESQLQILMMESRSKVDEAVSKFEKDSSSSSSSDSSTKPEASDTAKPNKPTEPGE
D39 --NVLEEKSKDELPSEIKAKLDAAFEKFKKDT-----------------------LKPGE
D39V --NVLEEKSKDELPSEIKAKLDAAFEKFKKDT-----------------------LKPGE
Hungary19A-6 --NVLEEKPKAELTSKAKAELDAAFEQFKKEP------------------------ELTK
EF3030 KVNVLEEKSKAELTSKTKKEVDAAFEKFKKDT-----------------------LKLGE
: .*. * : : ::* *..:*:*:. : :
TIGR4 KVAEAKKKVEEAEKKAKDQKEEDRRNYPTITYKTLELEIAESDVEVKKAELELVKVKANE
D39 KVAEAKKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAEFDVKVKEAELELVKEEAKE
D39V KVAEAKKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAEFDVKVKEAELELVKEEAKE
Hungary19A-6 KVAEAQKKVEEAKKKAEDQKEEDFRNYPTNTYKTIELEIAESDVKVKEAELELLKEEAKE
EF3030 KVAEAQKKVEEAKKKAKDQKEEDHRNYPTNTYKTLELEIAESDVKVKEAELELLKEEAK-
*****:******:***:****** ***** ****:****** **:**:*****:* :*:
TIGR4 PRDEQKIKQAEAEVESKQAEATRLKKIKTDREEAE--------------EEAKRRADAK-
D39 SRNEGTIKQAKEKVESKKAEATRLENIKTDRKKAE--------------EEAKRKADAKL
D39V SRNEGTIKQAKEKVESKKAEATRLENIKTDRKKAE--------------EEAKRKADAKL
Hungary19A-6 HRDEGTIKQVEEKVKSEKAEATRLEEIKTDR------------------EEAKRKADAKL
EF3030 TRNEDTINQAKAKVKSEQAEATRLKKIKTDREQAEATRLENIKTDREKAEEAKRKAEAE-
*:* .*:*.: :*:*::******::***** *****:*:*:
TIGR4 -----------EQGKPKGRAKRGVPGELATPDKKENDAKSSDSSVGEETLPSPSLKPEKK
D39 KEA---NVATSDQGKPKGRAKRGVPGELATPDKKENDAKSSDSSVGEETLPSSSLKSGKK
D39V KEA---NVATSDQGKPKGRAKRGVPGELATPDKKENDAKSSDSSVGEETLPSSSLKSGKK
Hungary19A-6 KEAVEKNVATSEQDKLKGRRKRGVLGEPATPDKKENDAKSSDSSVGEETLPSPSLKPEKK
EF3030 ----------EVKDKLKRRTKRAVPGEPATPDKKENDAKSSDSSVGEETLPSPSLKSGKK
:.* * * **.* ** ************************.***. **
TIGR4 VAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAKEP
D39 VAEAEKKVEEAEKKAKDQKEEDRRNYPTNTYKTLDLEIAESDVKVKEAELELVKEEAKEP
D39V VAEAEKKVEEAEKKAKDQKEEDRRNYPTNTYKTLDLEIAESDVKVKEAELELVKEEAKEP
Hungary19A-6 VAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAKEP
EF3030 VAEAQKKVAEAEKKAKDQKEEDRRNYPTNTYKTLDLEIAESDVKVKEAELELVKEEAKES
****:*** **:***:******************:********:**:************.
TIGR4 RNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPAPA
D39 RDEEKIKQAKAKVESKKAEATRLENIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPAPA
D39V RDEEKIKQAKAKVESKKAEATRLENIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPAPA
Hungary19A-6 QNEEKVKQAKAEVESKQAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPAPA
EF3030 RNEEKVKQAKAKVESKKAEATRLEKIKTDRKKA-EEAKRRAAEEDKVKEKPAEQPQPAPA
::***:*****:****:*******:******** *****:********************
TIGR4 PKAEK-------PAPAPKPENPAEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKTE
D39 TQPEK---------PAPKPEKPAEQPKAEKTDDQQAEEDYARRSEEEYNRLTQQQPPKTE
D39V TQPEK---------PAPKPEKPAEQPKAEKTDDQQAEEDYARRSEEEYNRLTQQQPPKTE
Hungary19A-6 PQPEKPAPKPEKPAPAPKPENPAEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKTE
EF3030 PQPEKPTEEPENPAPAPKPEKPAEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKTE
.:.** ******:*********. ****************************
TIGR4 KPAQPSTPKTGWKQENGMWYFYNTDGSMATGWLQNNGSWYYLNSNGAMATGWLQNNGSWY
D39 KPAQPSTPKTGWKQENGMWYFYNTDGSMATGWLQNNGSWYYLNANGAMATGWLQNNGSWY
D39V KPAQPSTPKTGWKQENGMWYFYNTDGSMATGWLQNNGSWYYLNANGAMATGWLQNNGSWY
Hungary19A-6 KPAQPSTPKTGWKQENGMWYFYNTDGSMATGWLQNNGSWYYLNSNGAMATGWLQNNGSWY
EF3030 KPAQPSTPKTGWKQENGMWYFYNTDGSMATGWLQYNGSWYYLNANGDMATGWLQNNGSWY
********************************** ********:** *************
TIGR4 YLNANGSMATGWLQNNGSWYYLNANGSMATGWLQY-------------------------
D39 YLNANGSMATGWLQNNGSWYYLNANGAMATGWLQYNGSWYYLNSNGAMATGWLQYNGSWY
D39V YLNANGSMATGWLQNNGSWYYLNANGAMATGWLQYNGSWYYLNSNGAMATGWLQYNGSWY
Hungary19A-6 YLNANGSMATGWLQNNGSWYYLNANGSMATGWLQYNGSWYYLNANGDMATGWLQNNGSWY
EF3030 YLNANGDMATGWLQNNGSWYYLNANGDMATGWLQNNGSWYYLNANGDMATGWLQNNGSWY
******.******************* *******
TIGR4 ---------------NGSWYYLNANGSMATGWLQYNGSWYYLNANGDMATGWVKDGDTWY
D39 YLNANGDMATGWLQNNGSWYYLNANGDMATGWLQYNGSWYYLNANGDMATGWVKDGDTWY
D39V YLNANGDMATGWLQNNGSWYYLNANGDMATGWLQYNGSWYYLNANGDMATGWVKDGDTWY
Hungary19A-6 YLNANGDMATGWLQNNGSWYYLNANGDMATGWLQYNGSWYYLNANGDMATGWVKDGDTWY
EF3030 YLNANGDMATGWLQNNGSWYYLNANGDMATGWLQNNGSWYYLNANGDMATGWVKDGDTWY
***********.******* *************************
TIGR4 YLEASGAMKASQWFKVSDKWYYVNGSGALAVNTTVDGYGVNANGEWVN
D39 YLEASGAMKASQWFKVSDKWYYVNGSGALAVNTTVDGYGVNANGEWVN
D39V YLEASGAMKASQWFKVSDKWYYVNGSGALAVNTTVDGYGVNANGEWVN
Hungary19A-6 YLEASGAMKASQWFKVSDKWYYVNGSGALAVNTTVDGYGVNANGEWVN
EF3030 YLEASGAMKASQWFKASDKWYYVNGSGALAVNTTVDGYGVNANGEWVN
***************.********************************