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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003898000
- symbol?: comFA
- synonym:
- description?: DEAD/DEAH box helicase
- DEAD/DEAH box helicase
- putative late competence protein
- superfamily II ATP-dependent DNA/RNA helicase required for DNA uptake
- ComF operon protein 1
- helicase
- helicase, putative
- helicase ComFA
- ComF operon protein A, DNA transporter ATPase
- competence protein F
- DNA/RNA helicase
- DNA transporter ATPase, ComF operon protein A
- helicase conserved C-terminal domain protein
- Involved in transformation; required for DNA uptake but not for binding; Related to ATP-dependent RNA/DNA helicases
- putative helicase
- Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)
- type III restriction enzyme, res subunit
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 5085641..5086939
- occurrence?: in 100% of 41 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MGIALENVNFTYQEGTPLASAALSDVSLTIEDGSYTALIGHTGSGKSTILQLLNGLLVPS
D39 MGIALENVNFIYQEGTPLASAALSDVSLTIEDGSYTALIGHTGSGKSTILQLLNGLLVPS
D39V MGIALENVNFIYQEGTPLASAALSDVSLTIEDGSYTALIGHTGSGKSTILQLLNGLLVPS
EF3030 MGIALENVNFTYQEGTPLASAALSDVSLTIEDGSYTALIGHTGSGKSTILQLLNGLLVPS
********** *************************************************
TIGR4 QGSVRVFDTLITSTSKNKDIRQIRKQVGLVFQFAENQIFEETVLKDVAFGPQNFGVSEED
D39 QGSVRVFDTLITSTSKNKDIRQIRKQVGLVFQFAENQIFEETVLKDVAFGPQNFGVSEED
D39V QGSVRVFDTLITSTSKNKDIRQIRKQVGLVFQFAENQIFEETVLKDVAFGPQNFGVSEED
EF3030 QGSVRVFDTLITSTSKNKDIRQIRKQVGLVFQFAENQIFEETVLKDVAFGPQNFGVSEED
************************************************************
TIGR4 AVKTAREKLALVGIDESLFDRSPFELSGGQMRRVAIAGILAMEPAILVLDEPTAGLDPLG
D39 AVKTAREKLALVGIDESLFDRSPFELSGGQMRRVAIAGILAMEPSILVLDEPTAGLDPLG
D39V AVKTAREKLALVGIDESLFDRSPFELSGGQMRRVAIAGILAMEPSILVLDEPTAGLDPLG
EF3030 AVKTAREKLALVGIDESLFDRSPFELSGGQMRRVAIAGILAMEPAILVLDEPTAGLDPLG
********************************************:***************
TIGR4 RKELMTLFKKLHQSGMTIVLVTHLMDDVAEYANQVYVMEKGRLVKGGKPSDVFQDVVFME
D39 RKELMTLFKKLHQSGMTIVLVTHLMDDVAEYANQVYVMEKGRLVKGGKPSDVFQDVVFME
D39V RKELMTLFKKLHQSGMTIVLVTHLMDDVAEYANQVYVMEKGRLVKGGKPSDVFQDVVFME
EF3030 RKELMTLFKKLHQSGMTIVLVTHLMDDVAEYANQVYVMEKGRLVKGGKPSDVFQDVVFME
************************************************************
TIGR4 EVQLGVPKITAFCKRLADRGVSFKRLPIKIEEFKESLNG
D39 EVQLGVPKITAFCKRLADRGVSFKRLPIKIEEFKESLNG
D39V EVQLGVPKITAFCKRLADRGVSFKRLPIKIEEFKESLNG
EF3030 EVQLGVPKITAFCKRLADRGVSFKRLPIKIEEFKESLNG
***************************************