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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003929000
- symbol?: rodZ
- synonym:
- description?: Cytoskeleton protein RodZ
- Cytoskeleton protein RodZ
- conserved hypothetical protein
- putative membrane protein
- DNA-binding protein
- helix-turn-helix domain-containing protein
- transcriptional regulation protein
- helix-turn-helix domain protein
- Transcriptional regulator
- Transcriptional regulator in cluster with unspecified monosaccharide ABC transport system
- Uncharacterized protein conserved in bacteria
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5220399..5221220
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
(12F)
ASP0581:
EL334_RS11610 (rodZ)
(19F)
ATCC 49619:
EL263_RS11140 (rodZ)
(23F)
ATCC 700669:
SPN23F_RS11585 (rodZ)
(14)
INV200:
SPNINV200_RS10990 (rodZ)
(14)
JJA:
SPJ_RS11135 (rodZ)
(19F)
MDRSPN001:
MDRSPN_RS10710 (rodZ)
(19A)
SP49:
BMJ42_RS12100 (rodZ)
(1)
SPN032672:
SPN032672_RS04590 (rodZ)
(3)
SPN034156:
SPN034156_RS05870 (rodZ)
(3)
SPN034183:
SPN034183_RS10885 (rodZ)
(3)
SPN994038:
SPN994038_RS10800 (rodZ)
(3)
SPN994039:
SPN994039_RS10805 (rodZ)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MRKKTIGEVLRLARINQGLSLDELQKKTEIQLDMLEAMEADDFDQLPSPFYTRSFLKKYA
D39 MRKKTIGEVLRLARINQGLSLDELQKKTEIQLDMLEAMEADDFDQLPSPFYTRSFLKKYA
D39V MRKKTIGEVLRLARINQGLSLDELQKKTEIQLDMLEAMEADDFDQLPSPFYTRSFLKKYA
Hungary19A-6 MRKKTIGEVLRLARINQGLSLDELQKKTEIQLDMLEAMEADDFDQLPSPFYTRSFLKKYA
EF3030 MRKKTIGEVLRLARINQGLSLDELQKKTEIQLDMLEAMEADDFDQLPSPFYTRSFLKKYA
************************************************************
TIGR4 WAVELDDQIVLDAYDSGSMITYEEVDVDEDELTGRRRSSKKKKKKTSFLPLFYFILFALS
D39 WAVELDDQIVLDAYDSGSMITYEEVDVDEDELTGRRRSSKKKKKKTSFLPLFYFILFALS
D39V WAVELDDQIVLDAYDSGSMITYEEVDVDEDELTGRRRSSKKKKKKTSFLPLFYFILFALS
Hungary19A-6 WAVELDDQIVLDAYDSGSMITYEEVDVDEDELTGRRRSSKKKKKKTSFLPLFYFILFALS
EF3030 WAVELDDQIVLDAYDSGSMITYEEVDVDEDELTGRRRSSKKKKKKTSFLPLFYFILFALS
************************************************************
TIGR4 ILIFVTYYVWNYIQTQPEEPSLSNYSVVQSTSSTSSVPHSSSSSSSSIESAISVSGEGNH
D39 ILIFVTYYVWNYIQTQPEEPSLSNYSVVQSTSSTSSVPHSSSSSSSSIESAISVSGEGNH
D39V ILIFVTYYVWNYIQTQPEEPSLSNYSVVQSTSSTSSVPHSSSSSSSSIESAISVSGEGNH
Hungary19A-6 ILIFVTYYVWNYIQTQPEESSLSNYSVVQSTSSTSSVPHSSSSSSSSIESAISVSGEGNH
EF3030 ILIFVTYYVWNYIQTQPEEPSLSNYSVVQSTSSTSSVPHSSSSSSSSIESAISVSGEGNH
*******************.****************************************
TIGR4 VEIAYKTSKETVKLQLAVSDVTSWVSVSESELEGGVTLSPKKKSAEATVATKSPVTITLG
D39 VEIAYKTSKETVKLQLAVSDVTSWVSVSESELEGGVTLSPKKKSAEATVATKSPVTITLG
D39V VEIAYKTSKETVKLQLAVSDVTSWVSVSESELEGGVTLSPKKKSAEATVATKSPVTITLG
Hungary19A-6 VEIAYKTSKETVKLQLAVSDVTSWVSVSESELEGGVTLSPKKKSAEATVATKSPVTITLG
EF3030 VEIAYKTSKETVKLQLAVSDVTSWVSVSESELEGGVTLSPKKKSAEATVATKSPVTITLG
************************************************************
TIGR4 VVKGVDLTVDNQTVDLSKLTAQTGQITVTFTKN
D39 VVKGVDLTVDNQTVDLSKLTAQTGQITVTFTKN
D39V VVKGVDLTVDNQTVDLSKLTAQTGQITVTFTKN
Hungary19A-6 VVKGVDLTVDNQTVDLSKLTAQTGQITVTFTKN
EF3030 VVKGVDLTVDNQTVDLSKLTAQTGQITVTFTKN
*********************************