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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae 670-6B
- locus tag: SP670_0283 [new locus tag: SP670_RS01415 ]
- pan locus tag?: PNEUPAN000960000
- symbol: rplC
- pan gene symbol?: rplC
- synonym:
- product: ribosomal protein L3
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP670_0283 [new locus tag: SP670_RS01415 ]
- symbol: rplC
- product: ribosomal protein L3
- replicon: chromosome
- strand: +
- coordinates: 250003..250629
- length: 627
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP002176 (250003..250629) NCBI
- BioCyc: see SP670_RS01415
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0193 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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601ATGACAAAAGGAATCTTAGGGAAAAAAGTGGGAATGACTCAAATCTTCACTGAAGCTGGC
GAATTGATCCCTGTAACAGTTATTGAAGCAACTCCAAACGTTGTTCTTCAAGTTAAAACT
GTTGAAACAGACGGATACAACGCTATCCAAGTTGGTTTCGATGACAAACGCGAAGTATTG
AGCAACAAACCTGCTAAAGGACATGTAGCGAAAGCTAACACGGCTCCTAAGCGCTTCATT
CGTGAATTCAAAAACGTTGAAGGCTTGGAAGTTGGCGCTGAAATCACAGTTGAAACATTC
GCAGCTGGAGATGTTGTTGACGTAACGGGTACTTCTAAAGGTAAAGGTTTCCAAGGTGTT
ATCAAACGCCACGGACAATCACGTGGACCAATGGCTCACGGTTCTCGTTACCACCGTCGT
CCAGGTTCTATGGGGCCTGTTGCACCTAACCGCGTATTCAAAGGTAAAAACCTTGCAGGA
CGTATGGGTGGCGACCGCGTAACAATTCAAAACCTTGAAGTTGTACAAGTTGTTCCAGAA
AAGAACGTTATCCTTATCAAAGGTAACGTACCAGGTGCTAAGAAATCTCTTATCACTATC
AAATCAGCAGTTAAAGCTGGTAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP670_0283 [new locus tag: SP670_RS01415 ]
- symbol: RplC
- description: ribosomal protein L3
- length: 208
- theoretical pI: 10.8816
- theoretical MW: 22177.6
- GRAVY: -0.245192
⊟Function[edit | edit source]
- TIGRFAM: 50S ribosomal protein uL3 (TIGR03625; HMM-score: 278.9)and 1 moreProtein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uL3 (TIGR03626; HMM-score: 67.7)
- TheSEED :
- LSU ribosomal protein L3p (L3e)
- PFAM: EFTPs (CL0575) Ribosomal_L3; Ribosomal protein L3 (PF00297; HMM-score: 60.9)and 1 moreno clan defined MlaD; MlaD protein (PF02470; HMM-score: 14.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.036813
- TAT(Tat/SPI): 0.001254
- LIPO(Sec/SPII): 0.002276
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: ADM90360 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MTKGILGKKVGMTQIFTEAGELIPVTVIEATPNVVLQVKTVETDGYNAIQVGFDDKREVLSNKPAKGHVAKANTAPKRFIREFKNVEGLEVGAEITVETFAAGDVVDVTGTSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKGKNLAGRMGGDRVTIQNLEVVQVVPEKNVILIKGNVPGAKKSLITIKSAVKAGK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0193 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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