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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae 670-6B
- locus tag: SP670_0284 [new locus tag: SP670_RS01420 ]
- pan locus tag?: PNEUPAN000961000
- symbol: rplD
- pan gene symbol?: rplD
- synonym:
- product: ribosomal protein L4/L1 family
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP670_0284 [new locus tag: SP670_RS01420 ]
- symbol: rplD
- product: ribosomal protein L4/L1 family
- replicon: chromosome
- strand: +
- coordinates: 250654..251277
- length: 624
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP002176 (250654..251277) NCBI
- BioCyc: see SP670_RS01420
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0194 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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601ATGGCAAACGTAACATTATTTGACCAAACTGGTAAAGAAGCTGGCCAAGTTGTTCTTAGC
GATGCAGTATTTGGTATCGAACCAAATGAATCAGTTGTGTTTGATGTAATCATCAGCCAA
CGCGCAAGCCTTCGTCAAGGAACACACGCTGTTAAAAACCGCTCTGCAGTATCAGGTGGT
GGACGCAAACCATGGCGTCAAAAAGGAACTGGACGTGCTCGTCAAGGTTCTATCCGCTCA
CCACAATGGCGTGGTGGTGGTGTTGTCTTCGGACCAACTCCACGTTCATACGGCTACAAA
CTTCCACAAAAAGTTCGTCGCCTAGCTCTTAAATCAGTTTACTCTGAAAAAGTTGCTGAA
AACAAATTCGTAGCTGTAGACGCTCTTTCATTTACAGCTCCAAAAACTGCTGAATTTGCA
AAAGTTCTTGCAGCATTGAGCATCGATTCTAAAGTTCTTGTTATCCTTGAAGAAGGAAAT
GAATTCGCAGCTCTTTCAGCTCGTAACCTTCCAAACGTGAAAGTTGCAACTGCTACAACT
GCAAGTGTTCTTGACATCGCAAATAGCGACAAACTTCTTGTCACACAAGCAGCTATCTCT
AAAATCGAGGAGGTTCTTGCATAA60
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624
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP670_0284 [new locus tag: SP670_RS01420 ]
- symbol: RplD
- description: ribosomal protein L4/L1 family
- length: 207
- theoretical pI: 10.6769
- theoretical MW: 22109.2
- GRAVY: -0.0613527
⊟Function[edit | edit source]
- TIGRFAM: Protein synthesis Ribosomal proteins: synthesis and modification 50S ribosomal protein uL4 (TIGR03953; HMM-score: 255.9)and 1 more50S ribosomal protein uL4 (TIGR03672; HMM-score: 18.4)
- TheSEED :
- LSU ribosomal protein L4p (L1e)
- PFAM: no clan defined Ribosomal_L4; Ribosomal protein L4/L1 family (PF00573; HMM-score: 216.8)and 1 moreRibosomal_L21p; Ribosomal prokaryotic L21 protein (PF00829; HMM-score: 12.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004298
- TAT(Tat/SPI): 0.001473
- LIPO(Sec/SPII): 0.000687
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: ADM90361 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MANVTLFDQTGKEAGQVVLSDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSEKVAENKFVAVDALSFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATTASVLDIANSDKLLVTQAAISKIEEVLA
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0194 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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